Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CAY59_RS03700 Genome accession   NZ_CP021145
Coordinates   734384..734902 (+) Length   172 a.a.
NCBI ID   WP_045395365.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 729384..739902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS03690 (CAY59_03645) gshA 732101..733669 (+) 1569 WP_045395367.1 glutamate--cysteine ligase -
  CAY59_RS03695 (CAY59_03650) - 733731..734294 (+) 564 WP_012128887.1 hypothetical protein -
  CAY59_RS03700 (CAY59_03655) luxS 734384..734902 (+) 519 WP_045395365.1 S-ribosylhomocysteine lyase Regulator
  CAY59_RS03705 (CAY59_03660) - 734991..736265 (-) 1275 WP_005426658.1 CNNM domain-containing protein -
  CAY59_RS03710 (CAY59_03665) - 736421..737215 (-) 795 WP_005426660.1 inner membrane protein YpjD -
  CAY59_RS03715 (CAY59_03670) ffh 737429..738811 (+) 1383 WP_005462555.1 signal recognition particle protein -
  CAY59_RS03720 (CAY59_03675) rpsP 739022..739270 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  CAY59_RS03725 (CAY59_03680) rimM 739298..739846 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19125.88 Da        Isoelectric Point: 4.8637

>NTDB_id=228564 CAY59_RS03700 WP_045395365.1 734384..734902(+) (luxS) [Vibrio campbellii strain LA16-V1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTTPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEHQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=228564 CAY59_RS03700 WP_045395365.1 734384..734902(+) (luxS) [Vibrio campbellii strain LA16-V1]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGTATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTACTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCACCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment