Detailed information NTG0228558

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM456_RS15260
• Genome accession: NZ_CP026755
• Coordinates: 2823085..2824077 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0077
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2818085..2829077

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM456_RS15235 (AM456_15255)	pphB	2819445..2820101 (+)	657	WP_094030058.1	protein-serine/threonine phosphatase	-
AM456_RS15240 (AM456_15260)	-	2820143..2820379 (-)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AM456_RS15245 (AM456_15265)	-	2820390..2821817 (-)	1428	WP_094030059.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AM456_RS15250 (AM456_15270)	-	2821817..2822410 (-)	594	WP_000767731.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AM456_RS15255 (AM456_15275)	-	2822557..2822964 (+)	408	WP_001208067.1	MarR family transcriptional regulator	-
AM456_RS15260 (AM456_15280)	rpoS	2823085..2824077 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM456_RS15265 (AM456_15285)	nlpD	2824140..2825234 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AM456_RS15270 (AM456_15290)	pcm	2825419..2826045 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM456_RS15275 (AM456_15295)	surE	2826039..2826800 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM456_RS15280 (AM456_15300)	truD	2826781..2827830 (-)	1050	WP_094030060.1	tRNA pseudouridine(13) synthase TruD	-
AM456_RS15285 (AM456_15305)	ispF	2827827..2828306 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM456_RS15290 (AM456_15310)	ispD	2828306..2829016 (-)	711	WP_000246153.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=228558 AM456_RS15260 WP_000081550.1 2823085..2824077(-) (rpoS) [Escherichia coli strain AR_0077]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=228558 AM456_RS15260 WP_000081550.1 2823085..2824077(-) (rpoS) [Escherichia coli strain AR_0077]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715