Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CAP31_RS13845 Genome accession   NZ_CP021138
Coordinates   2754241..2755737 (+) Length   498 a.a.
NCBI ID   WP_087448073.1    Uniprot ID   A0A1Y0GA48
Organism   Sulfuriferula sp. AH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2749241..2760737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP31_RS13815 (CAP31_13830) - 2749835..2750212 (+) 378 WP_087448067.1 gamma-butyrobetaine hydroxylase-like domain-containing protein -
  CAP31_RS13820 (CAP31_13835) hda 2750231..2750893 (+) 663 WP_087448068.1 DnaA regulatory inactivator Hda -
  CAP31_RS13825 (CAP31_13840) - 2750990..2752474 (-) 1485 WP_087448069.1 ammonium transporter -
  CAP31_RS13830 (CAP31_13845) glnK 2752487..2752825 (-) 339 WP_087448070.1 P-II family nitrogen regulator -
  CAP31_RS13835 (CAP31_13850) - 2752890..2753699 (-) 810 WP_087448071.1 TorF family putative porin -
  CAP31_RS13840 (CAP31_13855) - 2753980..2754234 (+) 255 WP_087448072.1 accessory factor UbiK family protein -
  CAP31_RS13845 (CAP31_13860) comM 2754241..2755737 (+) 1497 WP_087448073.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CAP31_RS13850 (CAP31_13865) - 2755750..2756796 (+) 1047 WP_087448074.1 VIT1/CCC1 transporter family protein -
  CAP31_RS13855 (CAP31_13870) - 2756897..2757196 (+) 300 WP_087448075.1 hypothetical protein -
  CAP31_RS13860 (CAP31_13875) - 2757209..2757673 (+) 465 WP_087448076.1 hypothetical protein -
  CAP31_RS13865 (CAP31_13880) xth 2757677..2758444 (-) 768 WP_087448406.1 exodeoxyribonuclease III -
  CAP31_RS13870 (CAP31_13885) - 2758444..2758956 (-) 513 WP_087448077.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52962.75 Da        Isoelectric Point: 7.9384

>NTDB_id=228516 CAP31_RS13845 WP_087448073.1 2754241..2755737(+) (comM) [Sulfuriferula sp. AH1]
MAIAVLHSRALTGMAAPEVVVEAHLANGLPSFTIVGLPETEVKEARDRVRAAIQNSRFEFPVSRITVNLAPADLPKESGR
YDLPIALGILAASGQIPVQALKEYEFAGELALTGELRPIRGALAMTLGAVSSGRAFILPTSSAAEAALVEHAVIYPADSL
LAVCAHLTRQTLLSPQPRTAAGDSAFSVPDFCDVKGQAGAKRALEVAASGGHSLLMSGPPGTGKSMLASRLPGILPDMSE
LEAIESAALLSLNGGFRLAHWRQRPYRSPHHTASAVALVGGGSNPRPGEISLAHHGVLFLDELPEFPRTVLEVLREPMES
GAITISRATRQVDFPARFQLVAAMNPCPCGYLGHPAGKCRCTPDQIARYRGRISGPLLDRIDIQIEVPALNHDELLKQAD
GEASAIIQQRVATARACQINRQGKANTALSGTEIDQYCAPDPAGEALLKQAITRLNLSARAYHRILKVARTIADLAGESS
VTSRHVAESIQYRRLAHT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=228516 CAP31_RS13845 WP_087448073.1 2754241..2755737(+) (comM) [Sulfuriferula sp. AH1]
ATGGCGATAGCGGTATTGCACAGCCGTGCACTCACAGGCATGGCTGCACCAGAAGTCGTTGTTGAGGCCCATTTGGCGAA
TGGGTTACCCAGCTTTACCATCGTCGGACTTCCTGAAACAGAAGTCAAAGAAGCACGCGACCGAGTCCGTGCCGCCATCC
AGAATTCCCGTTTCGAATTTCCGGTCAGCCGCATTACTGTCAACCTCGCCCCGGCTGACCTGCCTAAAGAATCAGGCCGT
TATGATTTGCCTATCGCGCTCGGCATTTTGGCCGCATCCGGACAAATCCCGGTGCAAGCGCTGAAGGAGTATGAATTTGC
CGGGGAACTGGCTCTGACTGGCGAACTGCGTCCGATACGCGGCGCACTGGCCATGACGTTGGGTGCGGTATCCAGCGGGC
GGGCATTCATCCTGCCGACCTCCAGCGCTGCGGAAGCCGCATTGGTCGAACATGCGGTCATTTATCCGGCTGACTCCCTA
TTAGCTGTATGCGCACATTTAACCCGGCAAACCCTGCTCTCTCCACAACCGCGAACGGCAGCCGGCGACTCGGCTTTTTC
AGTGCCGGATTTCTGCGATGTCAAAGGCCAGGCGGGTGCCAAGCGCGCACTGGAAGTTGCAGCCTCGGGAGGACACTCCC
TGCTGATGTCAGGGCCGCCGGGCACCGGAAAATCCATGCTGGCAAGCCGCTTGCCGGGCATATTACCGGACATGAGCGAA
CTCGAAGCCATCGAATCGGCCGCCTTATTGTCATTAAATGGCGGATTCCGTCTGGCGCATTGGCGCCAGCGTCCCTACCG
CAGCCCCCATCACACCGCCTCTGCGGTCGCCCTCGTCGGCGGCGGCAGCAACCCCCGCCCCGGCGAAATTTCGCTCGCAC
ACCATGGAGTATTGTTTCTGGACGAATTGCCGGAATTTCCGCGCACAGTGCTGGAAGTGTTGCGCGAACCGATGGAATCG
GGTGCAATCACGATTTCTCGCGCCACACGGCAGGTCGATTTCCCGGCACGATTTCAACTGGTCGCGGCGATGAACCCCTG
TCCCTGCGGTTATTTGGGGCATCCGGCAGGCAAATGCCGATGCACACCGGATCAGATCGCGCGCTATCGTGGACGTATCT
CCGGCCCACTGCTGGATCGGATCGATATACAAATTGAAGTGCCTGCGTTAAATCATGACGAATTGCTCAAACAGGCTGAT
GGCGAAGCCAGTGCCATTATCCAGCAACGCGTTGCAACTGCACGTGCGTGCCAAATCAATCGCCAAGGCAAAGCAAATAC
CGCATTATCCGGCACCGAAATAGACCAGTATTGCGCGCCCGACCCGGCAGGGGAAGCATTATTGAAACAGGCCATCACCC
GCCTGAACTTGTCAGCGCGAGCCTATCACCGCATACTCAAAGTGGCGCGCACGATCGCTGATCTGGCAGGAGAATCCAGC
GTTACCAGCCGACACGTTGCGGAATCGATCCAATATCGCCGCCTCGCCCACACTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0GA48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.354

99.398

0.55
  comM Vibrio campbellii strain DS40M4

53.939

99.398

0.536
  comM Glaesserella parasuis strain SC1401

52.6

100

0.528
  comM Haemophilus influenzae Rd KW20

52.505

100

0.526
  comM Legionella pneumophila str. Paris

49.503

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.503

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.108

100

0.464

Multiple sequence alignment