Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CAP31_RS13410 | Genome accession | NZ_CP021138 |
| Coordinates | 2669545..2670567 (+) | Length | 340 a.a. |
| NCBI ID | WP_087448000.1 | Uniprot ID | A0A1Y0GA68 |
| Organism | Sulfuriferula sp. AH1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2669545..2705973 | 2669545..2670567 | within | 0 |
Gene organization within MGE regions
Location: 2669545..2705973
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAP31_RS13410 (CAP31_13395) | pilA | 2669545..2670567 (+) | 1023 | WP_087448000.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CAP31_RS13415 (CAP31_13400) | ftsE | 2670564..2671217 (+) | 654 | WP_087448001.1 | cell division ATP-binding protein FtsE | - |
| CAP31_RS13420 (CAP31_13405) | ftsX | 2671214..2672125 (+) | 912 | WP_087448002.1 | permease-like cell division protein FtsX | - |
| CAP31_RS13425 (CAP31_13410) | rpoH | 2672203..2673054 (+) | 852 | WP_087448003.1 | RNA polymerase sigma factor RpoH | - |
| CAP31_RS13430 (CAP31_13415) | ccoS | 2673289..2673498 (-) | 210 | WP_087448004.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| CAP31_RS13435 (CAP31_13420) | - | 2673499..2675916 (-) | 2418 | WP_087448005.1 | heavy metal translocating P-type ATPase | - |
| CAP31_RS13440 (CAP31_13425) | - | 2675925..2676722 (-) | 798 | WP_087448006.1 | FixH family protein | - |
| CAP31_RS13445 (CAP31_13430) | ccoG | 2676719..2678152 (-) | 1434 | WP_087448007.1 | cytochrome c oxidase accessory protein CcoG | - |
| CAP31_RS13450 (CAP31_13435) | ccoP | 2678236..2679156 (-) | 921 | WP_087448008.1 | cytochrome-c oxidase, cbb3-type subunit III | - |
| CAP31_RS13455 (CAP31_13440) | - | 2679153..2679341 (-) | 189 | WP_087448009.1 | cbb3-type cytochrome c oxidase subunit 3 | - |
| CAP31_RS13460 (CAP31_13445) | ccoO | 2679357..2680100 (-) | 744 | WP_087448010.1 | cytochrome-c oxidase, cbb3-type subunit II | - |
| CAP31_RS13465 (CAP31_13450) | ccoN | 2680119..2681582 (-) | 1464 | WP_087448011.1 | cytochrome-c oxidase, cbb3-type subunit I | - |
| CAP31_RS13470 (CAP31_13455) | - | 2681734..2682327 (-) | 594 | WP_087448012.1 | SCO family protein | - |
| CAP31_RS13475 (CAP31_13460) | - | 2682328..2682789 (-) | 462 | WP_087448013.1 | Rrf2 family transcriptional regulator | - |
| CAP31_RS13480 (CAP31_13465) | ubiA | 2682786..2683661 (-) | 876 | WP_087448014.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| CAP31_RS13485 (CAP31_13470) | - | 2683658..2684185 (-) | 528 | WP_087448015.1 | chorismate lyase | - |
| CAP31_RS13490 (CAP31_13475) | - | 2684211..2685017 (-) | 807 | WP_157662759.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
| CAP31_RS13495 (CAP31_13480) | recG | 2685094..2687136 (-) | 2043 | WP_087448017.1 | ATP-dependent DNA helicase RecG | - |
| CAP31_RS13500 (CAP31_13485) | - | 2687144..2687524 (-) | 381 | WP_087448018.1 | RidA family protein | - |
| CAP31_RS13505 (CAP31_13490) | - | 2687626..2688777 (-) | 1152 | WP_087448019.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| CAP31_RS13510 (CAP31_13495) | - | 2689286..2690335 (-) | 1050 | WP_087448020.1 | DMT family transporter | - |
| CAP31_RS13515 (CAP31_13500) | - | 2690360..2692861 (-) | 2502 | WP_223247290.1 | plasma-membrane proton-efflux P-type ATPase | - |
| CAP31_RS13520 (CAP31_13505) | - | 2692914..2695049 (-) | 2136 | WP_087448021.1 | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | - |
| CAP31_RS13525 (CAP31_13510) | rpoZ | 2695066..2695272 (-) | 207 | WP_087448022.1 | DNA-directed RNA polymerase subunit omega | - |
| CAP31_RS13530 (CAP31_13515) | gmk | 2695281..2695946 (-) | 666 | WP_223247291.1 | guanylate kinase | - |
| CAP31_RS15335 (CAP31_13520) | - | 2695909..2696109 (+) | 201 | WP_087448024.1 | DUF1289 domain-containing protein | - |
| CAP31_RS13540 (CAP31_13525) | - | 2696299..2696811 (+) | 513 | WP_157662760.1 | DsrE family protein | - |
| CAP31_RS13545 (CAP31_13530) | - | 2696873..2697724 (-) | 852 | WP_255377115.1 | YicC/YloC family endoribonuclease | - |
| CAP31_RS13550 (CAP31_13535) | - | 2697805..2698745 (+) | 941 | Protein_2674 | serine/threonine protein kinase | - |
| CAP31_RS13555 (CAP31_13540) | - | 2698768..2699676 (+) | 909 | WP_087448027.1 | PP2C family serine/threonine-protein phosphatase | - |
| CAP31_RS13560 (CAP31_13545) | rph | 2699685..2700401 (+) | 717 | WP_087448028.1 | ribonuclease PH | - |
| CAP31_RS13565 (CAP31_13550) | rdgB | 2700401..2700994 (+) | 594 | WP_087448029.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| CAP31_RS13570 (CAP31_13555) | hemW | 2700997..2702160 (+) | 1164 | WP_087448030.1 | radical SAM family heme chaperone HemW | - |
| CAP31_RS13575 (CAP31_13560) | - | 2702157..2702894 (+) | 738 | WP_087448031.1 | ThiF family adenylyltransferase | - |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 36505.00 Da Isoelectric Point: 6.5143
>NTDB_id=228514 CAP31_RS13410 WP_087448000.1 2669545..2670567(+) (pilA) [Sulfuriferula sp. AH1]
MFSFFKKSGDKSAPPVTESAPAAVPAVPEIEAPKLSWAQRLKQGLSRTREQLGKQLTGLFSLGGKIDEALFEELETILLT
ADVGVEATQALLDQLRTRVRKDKFTDAHQLQSALRDALITLLAPLEAPLDVSTHKPFVIMMAGVNGAGKTTTIGKLAKYY
QAQGKSVLLAAGDTFRAAAREQLMVWGERNGVTVIAQEGGDSAAVIFDAIAAARARNIDIVLADTAGRLPTQMHLMEEIR
KVKRVIQKTDPQAPHEVLLVLDANTGQNAVTQVKTFDDALDVTGLVLTKLDGTAKGGVIAAIAKTRPRPIRFIGVGESLD
DLRPFVASDFVDALFEDNAA
MFSFFKKSGDKSAPPVTESAPAAVPAVPEIEAPKLSWAQRLKQGLSRTREQLGKQLTGLFSLGGKIDEALFEELETILLT
ADVGVEATQALLDQLRTRVRKDKFTDAHQLQSALRDALITLLAPLEAPLDVSTHKPFVIMMAGVNGAGKTTTIGKLAKYY
QAQGKSVLLAAGDTFRAAAREQLMVWGERNGVTVIAQEGGDSAAVIFDAIAAARARNIDIVLADTAGRLPTQMHLMEEIR
KVKRVIQKTDPQAPHEVLLVLDANTGQNAVTQVKTFDDALDVTGLVLTKLDGTAKGGVIAAIAKTRPRPIRFIGVGESLD
DLRPFVASDFVDALFEDNAA
Nucleotide
Download Length: 1023 bp
>NTDB_id=228514 CAP31_RS13410 WP_087448000.1 2669545..2670567(+) (pilA) [Sulfuriferula sp. AH1]
GTGTTTAGTTTCTTCAAAAAATCCGGCGACAAATCCGCACCCCCTGTCACGGAATCCGCGCCAGCAGCCGTACCAGCTGT
TCCTGAAATCGAGGCTCCCAAGCTTTCCTGGGCGCAGCGCCTGAAGCAGGGGCTGAGTCGTACCCGCGAGCAGCTCGGCA
AACAGCTGACGGGCTTGTTCAGCCTGGGCGGAAAAATCGACGAGGCGCTGTTCGAGGAACTGGAAACCATCCTGCTTACC
GCCGACGTAGGTGTGGAAGCGACGCAAGCCCTGCTCGACCAGCTGCGTACCCGCGTGCGCAAAGACAAGTTTACCGACGC
GCATCAGCTTCAATCCGCGCTGCGCGATGCATTGATAACGCTGCTCGCCCCGCTGGAGGCACCACTCGACGTCAGTACGC
ACAAGCCTTTCGTCATCATGATGGCAGGCGTAAACGGCGCCGGCAAAACCACCACCATAGGCAAACTGGCCAAATATTAT
CAGGCGCAGGGGAAATCGGTATTGCTGGCCGCCGGCGACACTTTCCGCGCGGCCGCCCGCGAACAGCTCATGGTATGGGG
CGAACGCAATGGCGTCACCGTGATCGCCCAGGAAGGCGGCGATTCTGCGGCAGTCATCTTTGACGCCATCGCGGCTGCAC
GCGCCCGCAACATCGACATCGTGCTGGCCGACACCGCCGGGCGCCTGCCGACCCAGATGCACCTGATGGAAGAGATTCGC
AAGGTCAAACGCGTCATCCAAAAGACCGACCCGCAAGCTCCCCATGAAGTGTTGCTGGTGCTGGATGCCAACACCGGACA
AAATGCCGTCACCCAGGTCAAAACCTTTGACGATGCGCTGGATGTGACAGGACTGGTACTGACCAAACTGGACGGCACTG
CCAAAGGCGGTGTCATCGCTGCCATTGCCAAGACCCGGCCGCGACCGATACGCTTTATCGGCGTTGGCGAAAGCCTGGAC
GATTTGCGCCCCTTCGTCGCCAGCGATTTCGTTGACGCCCTATTTGAGGATAATGCCGCATGA
GTGTTTAGTTTCTTCAAAAAATCCGGCGACAAATCCGCACCCCCTGTCACGGAATCCGCGCCAGCAGCCGTACCAGCTGT
TCCTGAAATCGAGGCTCCCAAGCTTTCCTGGGCGCAGCGCCTGAAGCAGGGGCTGAGTCGTACCCGCGAGCAGCTCGGCA
AACAGCTGACGGGCTTGTTCAGCCTGGGCGGAAAAATCGACGAGGCGCTGTTCGAGGAACTGGAAACCATCCTGCTTACC
GCCGACGTAGGTGTGGAAGCGACGCAAGCCCTGCTCGACCAGCTGCGTACCCGCGTGCGCAAAGACAAGTTTACCGACGC
GCATCAGCTTCAATCCGCGCTGCGCGATGCATTGATAACGCTGCTCGCCCCGCTGGAGGCACCACTCGACGTCAGTACGC
ACAAGCCTTTCGTCATCATGATGGCAGGCGTAAACGGCGCCGGCAAAACCACCACCATAGGCAAACTGGCCAAATATTAT
CAGGCGCAGGGGAAATCGGTATTGCTGGCCGCCGGCGACACTTTCCGCGCGGCCGCCCGCGAACAGCTCATGGTATGGGG
CGAACGCAATGGCGTCACCGTGATCGCCCAGGAAGGCGGCGATTCTGCGGCAGTCATCTTTGACGCCATCGCGGCTGCAC
GCGCCCGCAACATCGACATCGTGCTGGCCGACACCGCCGGGCGCCTGCCGACCCAGATGCACCTGATGGAAGAGATTCGC
AAGGTCAAACGCGTCATCCAAAAGACCGACCCGCAAGCTCCCCATGAAGTGTTGCTGGTGCTGGATGCCAACACCGGACA
AAATGCCGTCACCCAGGTCAAAACCTTTGACGATGCGCTGGATGTGACAGGACTGGTACTGACCAAACTGGACGGCACTG
CCAAAGGCGGTGTCATCGCTGCCATTGCCAAGACCCGGCCGCGACCGATACGCTTTATCGGCGTTGGCGAAAGCCTGGAC
GATTTGCGCCCCTTCGTCGCCAGCGATTTCGTTGACGCCCTATTTGAGGATAATGCCGCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
64.308 |
95.588 |
0.615 |