Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CAP31_RS13265 Genome accession   NZ_CP021138
Coordinates   2638765..2640195 (-) Length   476 a.a.
NCBI ID   WP_087447975.1    Uniprot ID   -
Organism   Sulfuriferula sp. AH1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2633765..2645195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP31_RS13225 (CAP31_13210) - 2634002..2634643 (-) 642 WP_223247287.1 LON peptidase substrate-binding domain-containing protein -
  CAP31_RS13230 (CAP31_13215) - 2634640..2635251 (-) 612 WP_087447969.1 flavin prenyltransferase UbiX -
  CAP31_RS13235 (CAP31_13220) - 2635235..2635783 (-) 549 WP_087447970.1 Gx transporter family protein -
  CAP31_RS13240 (CAP31_13225) - 2635764..2636150 (-) 387 WP_157662758.1 NusG domain II-containing protein -
  CAP31_RS13245 (CAP31_13230) rapZ 2636147..2636980 (-) 834 WP_087448396.1 RNase adapter RapZ -
  CAP31_RS13250 (CAP31_13235) hprK 2637004..2637948 (-) 945 WP_087447972.1 HPr(Ser) kinase/phosphatase -
  CAP31_RS13255 (CAP31_13240) - 2637945..2638400 (-) 456 WP_087447973.1 PTS sugar transporter subunit IIA -
  CAP31_RS13260 (CAP31_13245) hpf 2638407..2638742 (-) 336 WP_087447974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CAP31_RS13265 (CAP31_13250) rpoN/rpoN1 2638765..2640195 (-) 1431 WP_087447975.1 RNA polymerase factor sigma-54 Machinery gene
  CAP31_RS13270 (CAP31_13255) lptB 2640205..2640927 (-) 723 WP_087447976.1 LPS export ABC transporter ATP-binding protein -
  CAP31_RS13275 (CAP31_13260) lptA 2640930..2641526 (-) 597 WP_087447977.1 lipopolysaccharide transport periplasmic protein LptA -
  CAP31_RS13280 (CAP31_13265) lptC 2641513..2642082 (-) 570 WP_087447978.1 LPS export ABC transporter periplasmic protein LptC -
  CAP31_RS13285 (CAP31_13270) - 2642079..2642603 (-) 525 WP_087447979.1 HAD family hydrolase -
  CAP31_RS13290 (CAP31_13275) - 2642619..2643614 (-) 996 WP_087448397.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53475.98 Da        Isoelectric Point: 5.0088

>NTDB_id=228513 CAP31_RS13265 WP_087447975.1 2638765..2640195(-) (rpoN/rpoN1) [Sulfuriferula sp. AH1]
MKQGLQLKLSQHLTLTPQLQQSIRLLQLSTLELNQELELMVQENPLLERVDAIDDSSMRSPEYEPSVAGSTETTVDAPVE
TAPRELAELDWNESANYGSGDDNDDDDFEPQTSSQDVISLRDHLAWQLNLTPLLERDKRLVLLLIDALNESGYLTQSLED
IAEMLPDELEVDMDELQIALKHLQNLEPTGVGARNLAECLALQLQTLPKCTPHLALAQRIVEHDLAALGAHDYAGLKRKL
HCDDEALRAARELITHLNPRPGEAFGASDTRYIIPDVIVKKVKGLWVASLNPDAMPKLRINQLYADILSRNRDVNHQQLA
GQLQEAKWLIKNIMQRFDTILRVTQSIVDRQRHFFEHGEVAMRPLVLREIAEVVELHESTVSRVTTQKFMMTPRGIFELK
YFFGSHVNTDAGGACSATAIRALIKQLISAENTRKPLSDGQIAEVLGQQGIVVARRTIAKYRESMQIPPANQRKAL

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=228513 CAP31_RS13265 WP_087447975.1 2638765..2640195(-) (rpoN/rpoN1) [Sulfuriferula sp. AH1]
ATGAAACAGGGTTTACAACTTAAACTATCCCAGCACCTCACGCTGACGCCGCAATTGCAGCAATCCATCCGTTTGCTGCA
ATTGTCGACGCTTGAGCTCAATCAGGAACTGGAGCTGATGGTGCAAGAGAACCCGCTGCTCGAGCGGGTGGATGCGATCG
ACGATAGCAGCATGCGCAGCCCTGAGTATGAGCCGAGCGTAGCCGGCAGCACGGAGACGACTGTGGATGCCCCGGTTGAA
ACCGCCCCGCGGGAACTGGCCGAGCTGGACTGGAACGAGTCTGCCAATTACGGTTCCGGCGATGACAATGATGACGATGA
TTTTGAACCGCAGACATCGTCGCAAGACGTTATCAGTCTACGCGATCATCTGGCCTGGCAGCTCAATCTCACCCCGTTGC
TGGAGCGCGATAAGCGTCTGGTTCTGCTGCTGATCGATGCCCTGAATGAAAGCGGGTATCTTACCCAGAGCCTGGAAGAC
ATTGCGGAAATGTTGCCGGATGAGCTGGAAGTGGATATGGATGAGCTGCAAATTGCACTCAAGCATTTGCAGAATCTTGA
GCCAACGGGCGTCGGTGCGCGTAACCTCGCAGAATGCCTGGCATTGCAGCTGCAGACCCTGCCGAAATGCACTCCACATC
TGGCGTTGGCGCAGCGTATCGTTGAACATGATCTTGCGGCGCTGGGCGCGCATGATTATGCAGGACTGAAGCGCAAGTTG
CATTGTGATGACGAGGCGTTGCGTGCCGCCCGCGAGCTGATTACCCATCTCAATCCGCGTCCTGGCGAGGCGTTTGGCGC
ATCCGATACGCGTTATATCATTCCCGATGTGATCGTCAAGAAAGTCAAAGGCTTATGGGTAGCCAGTCTTAACCCGGATG
CCATGCCCAAATTGCGCATCAATCAACTGTATGCAGACATTCTGTCGCGCAATCGCGATGTCAATCACCAGCAGCTGGCC
GGGCAATTGCAGGAAGCGAAATGGCTGATCAAGAACATCATGCAGCGTTTCGATACCATATTGCGGGTGACGCAGAGTAT
CGTCGACAGGCAGCGCCATTTCTTCGAACATGGCGAAGTGGCGATGCGTCCGCTGGTATTGCGTGAAATCGCCGAAGTCG
TGGAATTGCACGAATCCACGGTATCGCGCGTGACCACCCAGAAATTCATGATGACCCCGCGCGGAATCTTTGAATTGAAA
TACTTTTTTGGCAGTCATGTGAATACTGACGCCGGCGGGGCTTGCTCGGCGACTGCAATTCGTGCGTTAATTAAGCAACT
GATCAGTGCGGAAAACACCAGGAAACCTTTATCCGACGGGCAAATTGCTGAGGTTCTCGGTCAGCAAGGTATCGTAGTAG
CGCGTCGAACGATTGCAAAATACCGTGAATCCATGCAAATTCCGCCCGCCAACCAGCGCAAAGCGCTATAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-474)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(114-304)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.493

100

0.563

Multiple sequence alignment