Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CAP31_RS07495 Genome accession   NZ_CP021138
Coordinates   1481611..1482969 (-) Length   452 a.a.
NCBI ID   WP_087446972.1    Uniprot ID   A0A1Y0G8R5
Organism   Sulfuriferula sp. AH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1476611..1487969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP31_RS07475 (CAP31_07465) - 1476931..1477824 (-) 894 WP_087446968.1 selenium metabolism-associated LysR family transcriptional regulator -
  CAP31_RS07480 (CAP31_07470) - 1477895..1478446 (+) 552 WP_087446969.1 hypothetical protein -
  CAP31_RS07485 (CAP31_07475) lplT 1478455..1479681 (+) 1227 WP_087446970.1 lysophospholipid transporter LplT -
  CAP31_RS07490 (CAP31_07480) - 1479674..1481614 (+) 1941 WP_087446971.1 ATP-dependent DNA helicase -
  CAP31_RS07495 (CAP31_07485) radA 1481611..1482969 (-) 1359 WP_087446972.1 DNA repair protein RadA Machinery gene
  CAP31_RS07500 (CAP31_07490) - 1483094..1483486 (+) 393 WP_087448308.1 hypothetical protein -
  CAP31_RS07505 (CAP31_07495) - 1483575..1484777 (-) 1203 WP_087446973.1 tryptophan--tRNA ligase -
  CAP31_RS07510 (CAP31_07500) - 1484784..1485485 (-) 702 WP_087446974.1 site-2 protease family protein -
  CAP31_RS07515 (CAP31_07505) - 1485486..1486112 (-) 627 WP_087446975.1 L-threonylcarbamoyladenylate synthase -
  CAP31_RS07520 (CAP31_07510) - 1486112..1486957 (-) 846 WP_087446976.1 3',5'-nucleoside bisphosphate phosphatase -
  CAP31_RS07525 (CAP31_07515) - 1487032..1487751 (+) 720 WP_087446977.1 hypothetical protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48503.84 Da        Isoelectric Point: 6.7565

>NTDB_id=228503 CAP31_RS07495 WP_087446972.1 1481611..1482969(-) (radA) [Sulfuriferula sp. AH1]
MAKPKILYTCTECGGSSSKWQGQCSHCSAWNTLVETVTELVAPPRYSALSVVSQIQSLASVEAVEDERVETSISELDRVL
GGGVVKGGVVLIGGDPGVGKSTLLLQALTAMSETHKTLYVSGEESARQIALRAHRLQLDADNLQLLAEIQLEKILATLQE
HQPFIAVIDSIQTIYSEGLQSAPGSVAQVRECAAQLTRFAKQSGTVIFLVGHVTKEGALAGPRVLEHIVDTVLYFEGDTS
STFRLVRAFKNRFGAVNELGVFAMTDKGLKGVSNPSAIFLSGHRADVPGSCVMVTQEGTRPLLVEIQALVESSPSPNPRR
LSVGLEQNRLAMLLAVLHRHAGLACYDQDVFINAVGGVRINEPAADLPLLLAIVSSFKNKAIPDKVVVFGEVGLAGEIRP
VQRGQERLKEAAKLGFTRAIVPNANKPRQVIAGMEVIGVERLQDAVTCLRDF

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=228503 CAP31_RS07495 WP_087446972.1 1481611..1482969(-) (radA) [Sulfuriferula sp. AH1]
ATGGCTAAACCAAAAATCCTTTATACCTGTACCGAATGCGGCGGATCATCGAGTAAATGGCAAGGGCAATGTTCGCATTG
CAGCGCCTGGAATACGCTGGTTGAAACCGTGACGGAACTGGTTGCGCCTCCCCGCTATAGCGCCTTGTCGGTGGTAAGTC
AGATTCAGAGCCTGGCCAGTGTCGAGGCAGTAGAAGATGAAAGGGTGGAAACGAGCATATCCGAACTGGATCGCGTGTTA
GGCGGCGGTGTGGTGAAAGGGGGTGTGGTATTGATCGGCGGAGATCCCGGGGTCGGCAAATCCACGCTGTTATTGCAGGC
ATTGACGGCGATGAGTGAAACGCATAAGACGCTGTATGTCAGTGGCGAGGAATCCGCTCGCCAGATTGCCTTGCGGGCGC
ATCGTTTGCAGCTGGATGCGGATAATCTGCAATTGCTGGCCGAAATACAGTTGGAAAAGATCCTGGCGACATTGCAGGAG
CATCAGCCATTTATTGCGGTAATTGATTCCATCCAGACAATTTATTCGGAAGGATTGCAATCTGCACCAGGATCGGTCGC
ACAAGTGCGGGAGTGCGCCGCGCAATTGACCCGCTTTGCCAAACAATCCGGAACCGTGATTTTTCTGGTCGGGCATGTGA
CCAAAGAAGGTGCATTGGCAGGGCCGCGTGTGCTGGAGCATATCGTGGATACAGTGCTGTATTTTGAAGGCGATACCAGC
TCCACTTTCCGTCTGGTACGTGCATTCAAGAATCGTTTCGGCGCGGTCAATGAACTGGGTGTGTTTGCGATGACGGATAA
GGGGCTGAAAGGCGTATCCAATCCGTCCGCGATATTTCTGTCCGGACATCGCGCCGATGTACCCGGTTCCTGTGTGATGG
TGACACAAGAAGGAACACGCCCGCTATTGGTGGAAATACAGGCACTGGTTGAATCTTCGCCATCCCCGAATCCTCGTCGC
TTATCGGTAGGGCTGGAACAGAACCGTCTGGCGATGTTGTTGGCGGTGCTGCACCGCCATGCGGGCCTGGCCTGCTACGA
TCAGGATGTGTTCATCAATGCGGTCGGCGGCGTGCGCATCAACGAGCCGGCTGCTGATTTGCCGCTATTGCTGGCGATAG
TATCCTCTTTCAAAAACAAGGCGATACCGGATAAAGTTGTGGTGTTTGGCGAAGTTGGTCTGGCGGGAGAAATCCGACCG
GTACAACGCGGTCAGGAACGCTTGAAAGAAGCGGCCAAGCTGGGTTTTACGCGGGCTATCGTACCTAATGCCAATAAACC
GCGGCAGGTAATTGCCGGCATGGAGGTGATCGGGGTTGAACGCTTGCAGGATGCGGTAACCTGTCTGCGCGATTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-425)

AAA domain (AAA_25)

(61-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0G8R5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.561

100

0.5
  radA Streptococcus mitis SK321

47.661

99.336

0.473
  radA Streptococcus pneumoniae Rx1

46.903

100

0.469
  radA Streptococcus pneumoniae D39

46.903

100

0.469
  radA Streptococcus pneumoniae R6

46.903

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.903

100

0.469
  radA Streptococcus mitis NCTC 12261

46.681

100

0.467

Multiple sequence alignment