Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CAH07_RS15825 Genome accession   NZ_CP021123
Coordinates   3032930..3033508 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3027930..3038508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS15790 (CAH07_15610) lepB 3027935..3028441 (-) 507 WP_003233128.1 signal peptidase I -
  CAH07_RS15795 (CAH07_15615) yhjE 3028443..3029066 (-) 624 WP_010886465.1 VTT domain-containing protein -
  CAH07_RS15800 (CAH07_15620) - 3029218..3029589 (+) 372 WP_014476361.1 hypothetical protein -
  CAH07_RS15805 (CAH07_15625) yhjC 3029788..3029988 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  CAH07_RS15810 (CAH07_15630) yhjB 3029985..3031454 (+) 1470 WP_003233134.1 sodium:solute symporter -
  CAH07_RS15815 (CAH07_15635) yhjA 3031498..3031767 (-) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  CAH07_RS15820 (CAH07_15640) yhxD 3031984..3032883 (+) 900 WP_101172512.1 SDR family oxidoreductase -
  CAH07_RS15825 (CAH07_15645) comK 3032930..3033508 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  CAH07_RS15830 (CAH07_15650) yhzC 3033801..3034034 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  CAH07_RS15835 (CAH07_15655) yhxC 3034062..3034919 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  CAH07_RS15840 (CAH07_15660) comW 3035031..3036560 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  CAH07_RS15845 (CAH07_15665) hemAT 3036699..3037997 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=228416 CAH07_RS15825 WP_029317573.1 3032930..3033508(-) (comK) [Bacillus subtilis strain SEM-9]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=228416 CAH07_RS15825 WP_029317573.1 3032930..3033508(-) (comK) [Bacillus subtilis strain SEM-9]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment