Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CAH07_RS13460 Genome accession   NZ_CP021123
Coordinates   2619267..2619842 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2614267..2624842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS13435 (CAH07_13275) mobB 2614663..2615184 (-) 522 WP_015252182.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  CAH07_RS13440 (CAH07_13280) glp 2615145..2616437 (-) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  CAH07_RS13445 (CAH07_13285) moeB 2616455..2617474 (-) 1020 WP_029317735.1 molybdopterin-synthase adenylyltransferase MoeB -
  CAH07_RS13450 (CAH07_13290) mobA 2617525..2618124 (-) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  CAH07_RS13455 (CAH07_13295) cse15 2618261..2619226 (+) 966 WP_029317734.1 spore protein Cse15 -
  CAH07_RS13460 (CAH07_13300) rok 2619267..2619842 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  CAH07_RS13465 (CAH07_13305) ykuV 2620308..2620754 (-) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  CAH07_RS13470 (CAH07_13310) ahpA 2620824..2621366 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  CAH07_RS13475 (CAH07_13315) mscT 2621603..2622406 (+) 804 WP_029317733.1 small-conductance mechanosensitive channel protein MscT -
  CAH07_RS13480 (CAH07_13320) ykuS 2622443..2622688 (-) 246 WP_003232382.1 YkuS family protein -
  CAH07_RS13485 (CAH07_13325) dapI 2622750..2623874 (-) 1125 WP_038428899.1 N-acetyldiaminopimelate deacetylase -
  CAH07_RS13490 (CAH07_13330) dapD 2623944..2624654 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=228403 CAH07_RS13460 WP_003232378.1 2619267..2619842(-) (rok) [Bacillus subtilis strain SEM-9]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=228403 CAH07_RS13460 WP_003232378.1 2619267..2619842(-) (rok) [Bacillus subtilis strain SEM-9]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment