Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C4J65_RS15005 Genome accession   NZ_CP026730
Coordinates   3279011..3279697 (-) Length   228 a.a.
NCBI ID   WP_115742863.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3274011..3284697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS14980 (C4J65_14965) - 3275220..3275414 (-) 195 WP_240330426.1 DUF397 domain-containing protein -
  C4J65_RS14985 (C4J65_14970) - 3275423..3276274 (-) 852 WP_115742859.1 helix-turn-helix transcriptional regulator -
  C4J65_RS14990 (C4J65_14975) - 3276503..3276940 (+) 438 WP_115742860.1 ATP-binding protein -
  C4J65_RS14995 (C4J65_14980) vraR 3276910..3277575 (-) 666 WP_115742861.1 response regulator transcription factor Regulator
  C4J65_RS15000 (C4J65_14985) - 3277572..3278996 (-) 1425 WP_115742862.1 histidine kinase -
  C4J65_RS15005 (C4J65_14990) vraR 3279011..3279697 (-) 687 WP_115742863.1 response regulator transcription factor Regulator
  C4J65_RS15010 (C4J65_14995) - 3279694..3281073 (-) 1380 WP_115742864.1 sensor histidine kinase -
  C4J65_RS15015 (C4J65_15000) - 3281066..3282310 (-) 1245 WP_115742865.1 acyltransferase -
  C4J65_RS15020 (C4J65_15005) - 3282303..3283292 (-) 990 WP_115742866.1 alpha/beta hydrolase -
  C4J65_RS15025 (C4J65_15010) - 3283452..3284357 (-) 906 WP_115742867.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24672.44 Da        Isoelectric Point: 4.9714

>NTDB_id=228402 C4J65_RS15005 WP_115742863.1 3279011..3279697(-) (vraR) [Streptomyces sp. CB09001]
MTTSSNGRVIRVLIADDQQMVRQGFTVLLNTQPDIEVIGQAVDGLDAVAKVAELAPEVVLMDIRMPELGGIEATRRITTA
TPQIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDDRPRAPLKARV
GELTERETEVLALIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 687 bp        

>NTDB_id=228402 C4J65_RS15005 WP_115742863.1 3279011..3279697(-) (vraR) [Streptomyces sp. CB09001]
ATGACGACCAGCAGCAACGGCCGCGTGATCCGCGTGCTGATCGCCGACGACCAGCAGATGGTCCGGCAGGGTTTCACCGT
GCTGCTCAACACCCAGCCCGACATCGAGGTGATCGGGCAGGCGGTGGACGGCCTGGACGCCGTGGCCAAGGTCGCCGAGC
TGGCCCCGGAGGTCGTCCTGATGGACATCCGGATGCCCGAGCTGGGCGGCATCGAGGCCACCCGGCGGATCACCACGGCC
ACCCCGCAGATCCGGGTGCTGGTGCTGACCACCTTCGACCTGGACGAGTACGTGTACGAGGCACTGCGGGCGGGGGCCTC
CGGGTTCCTGCTGAAGGACGCCTCCGCCGACCAGCTCGCCGAGGCGGTCCGGGTGGTGGCCGCCGGTGACGCCCTGCTCG
CGCCGGGGATCACGCGGCGGCTGATCGCCGAGTTCTCCCGGCTGGACGACCGCCCGCGCGCCCCGCTGAAGGCCCGCGTC
GGCGAGCTGACCGAGCGGGAGACGGAGGTGCTCGCCCTGATTGCGCAGGGCCTGTCGAACGCGGAGATCGCCCAGCGTCT
GGTGGTCGCCGAGCAGACGGTGAAGACCCATGTGGGCAGGATCCTGGTGAAGCTGGGCCTCAGGGACCGCACGCAGGCGG
CGGTGTTCGCGTACGAGTCGGGGCTGGTCCGCCCCTCGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-217)

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.981

94.737

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

40.969

99.561

0.408

Multiple sequence alignment