Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CAH07_RS13340 Genome accession   NZ_CP021123
Coordinates   2595492..2595770 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SEM-9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2590492..2600770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS13320 (CAH07_13160) ade 2590553..2592289 (-) 1737 WP_029317747.1 adenine deaminase -
  CAH07_RS13325 (CAH07_13165) ktrC 2592445..2593110 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  CAH07_RS13330 (CAH07_13170) ykqA 2593173..2594000 (-) 828 WP_029317746.1 gamma-glutamylcyclotransferase -
  CAH07_RS13335 (CAH07_13175) kinC 2594016..2595302 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  CAH07_RS13340 (CAH07_13180) abrB 2595492..2595770 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  CAH07_RS13345 (CAH07_13185) mreBH 2596054..2597061 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  CAH07_RS13350 (CAH07_13190) ykpC 2597162..2597296 (+) 135 WP_003238865.1 protein YkpC -
  CAH07_RS13355 (CAH07_13195) ampS 2597405..2598637 (+) 1233 WP_003232341.1 aminopeptidase -
  CAH07_RS13360 (CAH07_13200) panEB 2598671..2599582 (-) 912 WP_029317745.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=228402 CAH07_RS13340 WP_003244728.1 2595492..2595770(-) (abrB) [Bacillus subtilis strain SEM-9]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=228402 CAH07_RS13340 WP_003244728.1 2595492..2595770(-) (abrB) [Bacillus subtilis strain SEM-9]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment