Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CAH07_RS10105 Genome accession   NZ_CP021123
Coordinates   1900640..1901260 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SEM-9     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1895640..1906260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS10085 (CAH07_09970) dnaD 1895922..1896620 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  CAH07_RS10090 (CAH07_09975) nth 1896639..1897298 (+) 660 WP_009967580.1 endonuclease III -
  CAH07_RS10095 (CAH07_09980) ypoC 1897295..1897789 (+) 495 WP_009967579.1 YpoC family protein -
  CAH07_RS10100 (CAH07_09985) ponA 1897865..1900618 (-) 2754 WP_029317996.1 PBP1A family penicillin-binding protein -
  CAH07_RS10105 (CAH07_09990) recU 1900640..1901260 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  CAH07_RS10110 (CAH07_09995) yppC 1901301..1902263 (+) 963 WP_032729081.1 DUF2515 domain-containing protein -
  CAH07_RS10115 (CAH07_10000) sspM 1902288..1902392 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  CAH07_RS10120 (CAH07_10005) yppD 1902591..1902836 (+) 246 WP_015251831.1 YppD family protein -
  CAH07_RS10125 (CAH07_10010) yppE 1902882..1903253 (+) 372 WP_015714151.1 YppE family protein -
  CAH07_RS10130 (CAH07_10015) yppF 1903292..1903480 (-) 189 WP_003230690.1 YppF family protein -
  CAH07_RS10135 (CAH07_10020) sppG 1903668..1904045 (+) 378 WP_004398696.1 YppG family protein -
  CAH07_RS10140 (CAH07_10025) ypqA 1904066..1904485 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  CAH07_RS10145 (CAH07_10030) ptsA 1904623..1905129 (+) 507 WP_029317998.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=228397 CAH07_RS10105 WP_004399067.1 1900640..1901260(-) (recU) [Bacillus subtilis strain SEM-9]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=228397 CAH07_RS10105 WP_004399067.1 1900640..1901260(-) (recU) [Bacillus subtilis strain SEM-9]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment