Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C4J65_RS09215 Genome accession   NZ_CP026730
Coordinates   1969937..1971865 (+) Length   642 a.a.
NCBI ID   WP_115741969.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1964937..1976865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS36305 - 1965501..1965647 (+) 147 WP_205350977.1 hypothetical protein -
  C4J65_RS09200 (C4J65_09190) - 1966267..1966572 (+) 306 WP_162833092.1 YtxH domain-containing protein -
  C4J65_RS09205 (C4J65_09195) - 1966616..1968064 (+) 1449 WP_115741967.1 FGGY family carbohydrate kinase -
  C4J65_RS09210 (C4J65_09200) rcrP 1968204..1969937 (+) 1734 WP_115741968.1 ABC transporter ATP-binding protein Regulator
  C4J65_RS09215 (C4J65_09205) rcrQ 1969937..1971865 (+) 1929 WP_115741969.1 ABC transporter ATP-binding protein Regulator
  C4J65_RS09220 (C4J65_09210) - 1971989..1973178 (-) 1190 Protein_1795 RNA polymerase sigma factor -
  C4J65_RS09230 (C4J65_09220) dnaG 1973303..1975228 (-) 1926 WP_115741972.1 DNA primase -
  C4J65_RS09235 (C4J65_09225) - 1975258..1976523 (-) 1266 WP_115741973.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69401.64 Da        Isoelectric Point: 5.3192

>NTDB_id=228384 C4J65_RS09215 WP_115741969.1 1969937..1971865(+) (rcrQ) [Streptomyces sp. CB09001]
MAGPAGRMMAGGGPDQRSMDFKGSSKRLVSQFRPERATLFTLLACVVVSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLDNMRERGDGNVADMLRSTDFTPGQGIDFGAVGEVLLLALATFAVAGLLMAVATRLVNRAVNRTMFRLREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPQFVQQWRSTGQLNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGIMQPLMMCVSNLNYVLVA
VVGGLRVASGQLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQSADPIPGARPEDLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRIALDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVARGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLAADGAYARLYKAQFAEAVAE
VG

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=228384 C4J65_RS09215 WP_115741969.1 1969937..1971865(+) (rcrQ) [Streptomyces sp. CB09001]
ATGGCCGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGCCCCGACCAGCGATCGATGGACTTCAAGGGGTCGAGCAAACG
GCTCGTCTCCCAGTTCCGGCCGGAGCGGGCGACGCTGTTCACGCTGCTGGCGTGCGTGGTCGTCAGCGTCGGCCTCAACG
TGGTCGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGGGCC
ACGAAGGAGCAGGTCCTGGACAACATGCGCGAGCGCGGTGACGGCAACGTCGCCGACATGCTCCGCAGCACGGACTTCAC
CCCGGGCCAGGGCATCGACTTCGGCGCGGTCGGCGAGGTGCTGCTGCTCGCGCTGGCGACGTTCGCGGTGGCGGGTCTGC
TGATGGCGGTGGCCACCCGCCTGGTGAACCGGGCGGTGAACCGGACCATGTTCCGGCTGCGCGAGGACGTCCAGACGAAG
CTGTCCCGGCTGCCGCTGTCCTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTTCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGGCAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGCCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTGCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGGCTGCGGGTGGCCTCGGGCCAGCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGGTCTTCGAAC
TCCTGGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCGCCCGGCCCGAGGACCTGCGCGGCCGGGTGGAACTGGAG
CACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGCCACACGGTCGC
CATCGTCGGCCCGACGGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGGCGGA
TCGCCCTGGACGGCGTCGACATCGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCGCGGGAGGTCGCCCGCGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCGTACGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGTCGTCCGTGGACACCCGGACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATTCGGGACGCGGACACGATTTTGGTGATGGAGGACGGGGCGATCGTGGAGCAGG
GGGCGCATGCGGAGCTGCTGGCCGCGGACGGGGCGTACGCGCGGTTGTACAAGGCTCAGTTCGCGGAGGCTGTGGCCGAG
GTGGGTTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.894

97.04

0.407

Multiple sequence alignment