Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C4J65_RS09210 Genome accession   NZ_CP026730
Coordinates   1968204..1969937 (+) Length   577 a.a.
NCBI ID   WP_115741968.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1963204..1974937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS09180 (C4J65_09170) - 1964005..1965429 (+) 1425 WP_115741965.1 GAF domain-containing protein -
  C4J65_RS36305 - 1965501..1965647 (+) 147 WP_205350977.1 hypothetical protein -
  C4J65_RS09200 (C4J65_09190) - 1966267..1966572 (+) 306 WP_162833092.1 YtxH domain-containing protein -
  C4J65_RS09205 (C4J65_09195) - 1966616..1968064 (+) 1449 WP_115741967.1 FGGY family carbohydrate kinase -
  C4J65_RS09210 (C4J65_09200) rcrP 1968204..1969937 (+) 1734 WP_115741968.1 ABC transporter ATP-binding protein Regulator
  C4J65_RS09215 (C4J65_09205) rcrQ 1969937..1971865 (+) 1929 WP_115741969.1 ABC transporter ATP-binding protein Regulator
  C4J65_RS09220 (C4J65_09210) - 1971989..1973178 (-) 1190 Protein_1795 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62740.99 Da        Isoelectric Point: 5.9788

>NTDB_id=228383 C4J65_RS09210 WP_115741968.1 1968204..1969937(+) (rcrP) [Streptomyces sp. CB09001]
MLIRLLRTYLRPYKRPIALLVALQFLQTCASLYLPTLNADIIDEGVVKGDSGYILSYGALMIGISLAQVVCNIGAVFYGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVMALGLDVPLSGV
LLGVVPVLAVCVTLIVRKLRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTELTDVALGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVAPVTELRRHGHLEIREAGFRYPGAEEPVLRNIALVAKPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVDVR
TVDPKTLAKVVSLVPQKPYLFAGTVATNLRYGNPDATDEELWHALKVAQAKDFVSELEGGLDAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAELAQETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=228383 C4J65_RS09210 WP_115741968.1 1968204..1969937(+) (rcrP) [Streptomyces sp. CB09001]
GTGCTCATACGACTACTGCGGACCTATCTCAGGCCCTACAAGAGACCCATCGCCCTGCTGGTGGCGCTGCAGTTCCTGCA
GACCTGCGCCTCCCTGTACCTGCCGACCCTGAACGCGGACATCATCGACGAAGGCGTCGTGAAGGGTGACTCGGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTGGTCTGCAACATCGGTGCGGTCTTCTACGGGGCG
CGCACCGCGGCCGCCCTCGGCCGGGACGTGCGCGGTGCGGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGCTCGGGGTCGTGCCGGTGCTGGCGGTCTGCGTCACGCTGATCGTGCGGAAGCTGCGCCCGCTGTTCCGGAAGATGCA
GGTGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGGTTCCGGAAGGCCAACACCGAGCTGACCGACGTGGCCCTCGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTCTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACGGCGTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGAGCAGCGTGGTGCCG
CCGGTGGCACCGGTCACCGAGCTGCGCAGGCACGGACACCTGGAGATCCGGGAGGCGGGCTTCCGCTACCCCGGTGCCGA
GGAGCCGGTGCTCAGGAACATCGCCCTGGTCGCCAAGCCCGGCGAGACGACCGCCGTCATCGGTTCGACCGGCAGCGGCA
AGTCGACCCTGCTGGGCCTGGTCCCCCGGCTCTTCGACGCCACCGAGGGCGAGGTCCTGGTCGACGGGGTGGACGTGCGG
ACCGTCGACCCGAAGACGCTGGCCAAGGTGGTGAGCCTGGTACCGCAGAAGCCGTACCTCTTCGCCGGCACCGTCGCGAC
CAATCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGAAGGTGGCGCAGGCCAAGGACTTCG
TCTCCGAGCTGGAGGGCGGGCTCGACGCGCCGGTCGCGCAGGGCGGCACCAACGTGTCGGGCGGTCAGCGCCAGCGCCTC
GCGATCGCGCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGTTGCGGGCGGAGCTGGCGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCGACCATCA
GGGACGCGGACCGGATCGTCGTGCTGGACGAGGGGCGGGTGGTCGGCGTGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.787

97.574

0.388