Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C4J65_RS05860 Genome accession   NZ_CP026730
Coordinates   1246648..1247289 (-) Length   213 a.a.
NCBI ID   WP_115741420.1    Uniprot ID   -
Organism   Streptomyces sp. CB09001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1241648..1252289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J65_RS05830 (C4J65_05820) - 1242046..1242552 (+) 507 WP_007388340.1 HNH endonuclease -
  C4J65_RS05835 (C4J65_05825) - 1242696..1243655 (-) 960 WP_059301910.1 SPFH domain-containing protein -
  C4J65_RS05840 (C4J65_05830) - 1243833..1244264 (-) 432 WP_115741416.1 NfeD family protein -
  C4J65_RS05845 (C4J65_05835) - 1244320..1245117 (-) 798 WP_115741417.1 ABC transporter ATP-binding protein -
  C4J65_RS05850 (C4J65_05840) - 1245271..1246053 (+) 783 WP_115741418.1 hypothetical protein -
  C4J65_RS05855 (C4J65_05845) chpE 1246224..1246472 (-) 249 WP_115741419.1 chaplin ChpE -
  C4J65_RS05860 (C4J65_05850) vraR 1246648..1247289 (-) 642 WP_115741420.1 response regulator transcription factor Regulator
  C4J65_RS05865 (C4J65_05855) - 1247282..1248460 (-) 1179 WP_115741421.1 GAF domain-containing sensor histidine kinase -
  C4J65_RS05870 (C4J65_05860) - 1248679..1249374 (+) 696 WP_115741422.1 SDR family oxidoreductase -
  C4J65_RS05875 (C4J65_05865) - 1249374..1250483 (+) 1110 WP_115741423.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  C4J65_RS05880 (C4J65_05870) - 1250837..1251553 (+) 717 WP_115741424.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22969.22 Da        Isoelectric Point: 5.1411

>NTDB_id=228377 C4J65_RS05860 WP_115741420.1 1246648..1247289(-) (vraR) [Streptomyces sp. CB09001]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAQELMPDVILMDVKMPGMDGVDALRRLRELDNHAR
VLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESSSGPGRAGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=228377 C4J65_RS05860 WP_115741420.1 1246648..1247289(-) (vraR) [Streptomyces sp. CB09001]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTGGTCCGCCGGGGACTGCGGACCTTCCTGGAGGTACA
GGACGACATCGAGGTGGTCGGTGAGGCCGCGGACGGGGCCGAGGGCGTCGACCGCGCCCAGGAGCTGATGCCCGACGTGA
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCGTCGACGCGCTGCGCAGACTCCGCGAGCTGGACAACCACGCGCGC
GTGCTCGTCGTCACCAGCTTCACCGAGCAGCGCACCGTGGTCCCGGCCCTGCGGGCGGGCGCGGCCGGGTACGTGTACAA
GGACGTCGACCCCGACGCGCTGGCCGGCGCCATCCGCTCGGTCCACGCCGGGCACATCCTGCTCCAGCCCGAGGTCGCGG
GCGCCCTCCTGAGCCAGGAGGAGAGCAGCTCCGGGCCGGGCAGGGCGGGCTCCCTCACGGAGCGGGAGCGCGAGGTGCTG
GGCCTGATAGCGGACGGCCGCTCCAACCGGGAGATCGCGCGTGCGCTCGTCCTCTCCGAGAAGACGGTGAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTCGCGGACCGCACCCAGGCCGCCCTGTGGGCCGTGCGCCACGGTGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.673

97.653

0.446
  degU Bacillus subtilis subsp. subtilis str. 168

37.104

100

0.385

Multiple sequence alignment