Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   C4R22_RS11315 Genome accession   NZ_CP026723
Coordinates   2177574..2178815 (+) Length   413 a.a.
NCBI ID   WP_049035607.1    Uniprot ID   -
Organism   Escherichia coli strain 266917_2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2172574..2183815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4R22_RS11300 - 2173089..2174765 (+) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -
  C4R22_RS11305 kdsB 2174775..2175515 (+) 741 WP_000030759.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4R22_RS11310 - 2175512..2177539 (+) 2028 WP_086776281.1 capsular polysaccharide biosynthesis protein -
  C4R22_RS11315 kpsS 2177574..2178815 (+) 1242 WP_049035607.1 capsular biosynthesis protein Regulator
  C4R22_RS11320 - 2178936..2180276 (-) 1341 WP_001560696.1 glycosyltransferase family A protein -
  C4R22_RS11325 - 2180405..2181574 (-) 1170 WP_001560697.1 nucleotide sugar dehydrogenase -
  C4R22_RS11330 - 2181684..2182337 (-) 654 WP_024190280.1 hypothetical protein -
  C4R22_RS11335 glf 2182583..2183692 (-) 1110 WP_001560699.1 UDP-galactopyranose mutase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 49176.00 Da        Isoelectric Point: 10.1236

>NTDB_id=228309 C4R22_RS11315 WP_049035607.1 2177574..2178815(+) (kpsS) [Escherichia coli strain 266917_2]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADCKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKKD
KKDCIMLSKKTSQ

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=228309 C4R22_RS11315 WP_049035607.1 2177574..2178815(+) (kpsS) [Escherichia coli strain 266917_2]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTGTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAAGAT
AAAAAAGATTGTATTATGCTATCAAAAAAAACATCACAATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

95.884

0.38