Detailed information NTG0228304

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C4R22_RS09400
• Genome accession: NZ_CP026723
• Coordinates: 1819505..1820497 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 266917_2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1814505..1825497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4R22_RS09375	ygbN	1815160..1816524 (+)	1365	WP_000104457.1	GntP family transporter	-
C4R22_RS09380	-	1816563..1816799 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C4R22_RS09385	-	1816810..1818237 (-)	1428	WP_001551547.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C4R22_RS09390	-	1818237..1818830 (-)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C4R22_RS09395	-	1818977..1819384 (+)	408	WP_001208066.1	MarR family transcriptional regulator	-
C4R22_RS09400	rpoS	1819505..1820497 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C4R22_RS09405	nlpD	1820560..1821654 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C4R22_RS09410	pcm	1821839..1822465 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C4R22_RS09415	surE	1822459..1823220 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C4R22_RS09420	truD	1823201..1824250 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
C4R22_RS09425	ispF	1824247..1824726 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C4R22_RS09430	ispD	1824726..1825436 (-)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=228304 C4R22_RS09400 WP_000081550.1 1819505..1820497(-) (rpoS) [Escherichia coli strain 266917_2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=228304 C4R22_RS09400 WP_000081550.1 1819505..1820497(-) (rpoS) [Escherichia coli strain 266917_2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715