Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C4R22_RS09090 Genome accession   NZ_CP026723
Coordinates   1762508..1763023 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 266917_2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1757508..1768023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4R22_RS09065 ygaZ 1757907..1758644 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  C4R22_RS09070 ygaH 1758634..1758969 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  C4R22_RS09075 emrR 1759060..1759590 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C4R22_RS09080 emrA 1759717..1760889 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C4R22_RS09085 emrB 1760906..1762444 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C4R22_RS09090 luxS 1762508..1763023 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C4R22_RS09095 gshA 1763173..1764729 (-) 1557 WP_001551535.1 glutamate--cysteine ligase -
  C4R22_RS09100 yqaA 1764802..1765230 (-) 429 WP_001287454.1 YqaA family protein -
  C4R22_RS09105 yqaB 1765227..1765793 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C4R22_RS09135 csrA 1767023..1767208 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=228301 C4R22_RS09090 WP_001130211.1 1762508..1763023(-) (luxS) [Escherichia coli strain 266917_2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=228301 C4R22_RS09090 WP_001130211.1 1762508..1763023(-) (luxS) [Escherichia coli strain 266917_2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731