Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CAL11_RS00340 Genome accession   NZ_CP021107
Coordinates   78959..80398 (+) Length   479 a.a.
NCBI ID   WP_050458203.1    Uniprot ID   -
Organism   Bordetella genomosp. 6 strain AU22978     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 73959..85398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL11_RS00325 (CAL11_00325) - 74710..75993 (+) 1284 WP_086091802.1 amidase -
  CAL11_RS00330 (CAL11_00330) leuA 76180..77886 (-) 1707 WP_033466914.1 2-isopropylmalate synthase -
  CAL11_RS00335 (CAL11_00335) - 78313..78960 (-) 648 WP_086091803.1 hypothetical protein -
  CAL11_RS00340 (CAL11_00340) rpoN/rpoN1 78959..80398 (+) 1440 WP_050458203.1 RNA polymerase factor sigma-54 Machinery gene
  CAL11_RS00345 (CAL11_00345) - 80491..80793 (+) 303 WP_003815905.1 (2Fe-2S)-binding protein -
  CAL11_RS00350 (CAL11_00350) - 80821..81699 (-) 879 WP_033466910.1 LysR substrate-binding domain-containing protein -
  CAL11_RS00355 (CAL11_00355) - 81807..82736 (+) 930 WP_086094484.1 DMT family transporter -
  CAL11_RS00360 (CAL11_00360) bfr 83075..83551 (+) 477 WP_003815898.1 bacterioferritin -
  CAL11_RS00365 (CAL11_00365) - 83637..84320 (-) 684 WP_080699941.1 hypothetical protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52395.60 Da        Isoelectric Point: 4.8206

>NTDB_id=228250 CAL11_RS00340 WP_050458203.1 78959..80398(+) (rpoN/rpoN1) [Bordetella genomosp. 6 strain AU22978]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAP
DTELRLDEMPGSGGVHPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAE
AEADLDELRAVLTLLQSFDPVGIGARDMAECLQLQLRQPDLARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQ
CDEAVVRAAHALILRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGARQGGNAGLQA
QLQQARWMIRNVEQRFDTILRVSQAIVAHQQAFFSQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKR
FFGAGVSTDGGDATSATAVQAVIRQLVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAHAAGR

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=228250 CAL11_RS00340 WP_050458203.1 78959..80398(+) (rpoN/rpoN1) [Bordetella genomosp. 6 strain AU22978]
ATGCAAAATATTGTACCTATGACTCGTCCCGCGCTAGAACTTCGTCCTGGTCAACACCTGACATTGACCCCTCAACTGCA
ACAGTCGATCCGGCTGTTGCAGCTGTCGTCGCTGGAGCTGGAGGCCGAACTGTCGCAGGCGCTGGCCGAGAATCCGTTGC
TGGAACGCGACGAAGACCCGGCGCGCGAGGAGCAGGCCGACCCCGAGCGCGAGGCCTCGGTCGAGGCCGACGAGGCGCCG
GACACCGAATTGCGCCTGGACGAGATGCCCGGTTCGGGCGGCGTCCATCCCGACGACGACAGCGACCTGCCGCAGGCGGC
GCGCCCAGATACCCTGCGCGAGCACCTGCTGGGGCAGTTGGCGCTGACGCGCGCCGCGCCGCGCGACGCGGCGCTGTGCG
GCTTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGATTCGCCCCTGGAAGAAATCCTGACCTGGCTGCCGGCCGAG
GCGGAGGCCGACCTGGACGAGCTGCGCGCGGTGCTGACATTGCTGCAATCGTTCGACCCGGTGGGCATCGGCGCGCGCGA
CATGGCCGAATGCCTGCAGCTGCAACTGCGCCAGCCCGATCTGGCGCGTCTGCCCGAGGCGGCCGACGCCGAGGTGCTGG
CCTGTGCGCGGCGCATCTGCGCGCAGCACCTGCCCTTGCTGGCCACCGGCAACGTGGCCCGCGTGCGCGAGGCCGTGCAA
TGCGACGAGGCGGTCGTGCGCGCTGCGCATGCGCTGATCCTGCGCCTGGAGCCGCGGCCGGGCCGCGCCTGGACGGTGCC
GGCGGCCGATTACGCCATTCCCGACGTGATCGTGCGCCGTACGCGCCAGGGCTGGCAGGCGGTGCTCAACAGCGCCGTCG
TGCCGCGGCTGCACGTCAATGCCGTCTATGCGCAGGTGCTGGGGGGCGCGCGCCAGGGCGGCAACGCCGGCCTGCAGGCG
CAGTTGCAACAGGCGCGCTGGATGATACGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTCTCGCAGGCGATCGT
GGCGCATCAGCAGGCGTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGCTGATCCTCAAGGACATCGCCGGCGAACTGG
ATCTGCACGAATCGACCATTTCGCGGGCCACGACGCAGAAGTACATGCTCACACCGTTTGGCACGCTGGAGCTGAAGCGC
TTCTTCGGCGCGGGCGTGTCCACCGACGGCGGCGACGCCACCTCGGCCACCGCGGTGCAGGCGGTGATCCGCCAGCTGGT
GGCCGACGAGGATCGCGCCAAGCCCCTGTCGGACAGCCAGATCATGCAGCGCCTGGCCGACCAGGGCATCGTCATTGCCC
GCCGCACGGTGGCCAAGTACCGCGAGGCGCTGCGGATTGCGCCAGCGACGCTACGCAAGGCCCATGCGGCGGGTCGTTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(318-473)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.419

100

0.511

Multiple sequence alignment