Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DFI_RS10315 Genome accession   NZ_CP021081
Coordinates   2128932..2129639 (-) Length   235 a.a.
NCBI ID   WP_338030617.1    Uniprot ID   -
Organism   Deinococcus ficus strain CC-FR2-10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2123932..2134639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DFI_RS10280 (DFI_10290) ribD 2123994..2125052 (+) 1059 WP_043778152.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  DFI_RS10285 (DFI_10295) - 2125054..2125689 (+) 636 WP_027463049.1 riboflavin synthase -
  DFI_RS10290 (DFI_10300) - 2125686..2126870 (+) 1185 WP_027463050.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  DFI_RS10295 (DFI_10305) ribH 2126905..2127378 (+) 474 WP_022801372.1 6,7-dimethyl-8-ribityllumazine synthase -
  DFI_RS10300 (DFI_10310) - 2127496..2127753 (+) 258 WP_051307788.1 RNA-binding S4 domain-containing protein -
  DFI_RS10305 (DFI_10315) - 2127753..2128304 (+) 552 WP_027463052.1 DUF1684 domain-containing protein -
  DFI_RS10310 (DFI_10320) - 2128307..2128945 (+) 639 WP_162145418.1 SDR family oxidoreductase -
  DFI_RS10315 (DFI_10325) comF 2128932..2129639 (-) 708 WP_338030617.1 ComF family protein Machinery gene
  DFI_RS10320 (DFI_10330) - 2129705..2130007 (-) 303 WP_027463055.1 hypothetical protein -
  DFI_RS10325 (DFI_10335) proS 2130067..2131551 (+) 1485 WP_027463056.1 proline--tRNA ligase -
  DFI_RS10335 - 2131856..2132488 (-) 633 WP_118375878.1 SLATT domain-containing protein -
  DFI_RS10340 (DFI_10345) - 2132619..2133971 (-) 1353 WP_081425846.1 reverse transcriptase domain-containing protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24812.69 Da        Isoelectric Point: 11.7585

>NTDB_id=228169 DFI_RS10315 WP_338030617.1 2128932..2129639(-) (comF) [Deinococcus ficus strain CC-FR2-10]
MTRLPASSSVSAAPERPGRPAPALPAALTGLLRALIPHACPGCGQQLGRAAGLCAPCRAGLHVRLETHSPLRATPAPHLI
TLGRYAGVNRRAVRELKFTGVRDLAGVLGGALADGLPAHWNIQAVIPVPLHAARQRQRGFNQADLLARAIARPHGLPVHA
ALTRTRATRQQARQHAADRDDLHGAFTVNARELPRGPLLLVDDVLTTGHTLIACRDALLQAGVAPDDLSYAVIAR

Nucleotide


Download         Length: 708 bp        

>NTDB_id=228169 DFI_RS10315 WP_338030617.1 2128932..2129639(-) (comF) [Deinococcus ficus strain CC-FR2-10]
ATGACCCGGTTGCCCGCCTCCTCTTCCGTCTCTGCCGCCCCGGAGCGGCCCGGTCGCCCGGCTCCTGCCCTTCCCGCCGC
CCTCACCGGCCTGCTGCGCGCGCTGATTCCCCACGCCTGCCCCGGCTGCGGGCAGCAGCTCGGCCGGGCCGCGGGCCTGT
GCGCCCCCTGCCGCGCGGGCCTGCACGTCCGGCTGGAGACGCACAGCCCCCTGCGCGCCACGCCCGCCCCGCACCTGATC
ACCCTGGGACGGTACGCCGGCGTGAACCGCCGCGCCGTGCGGGAACTGAAGTTCACCGGTGTCCGCGACCTCGCCGGCGT
GCTCGGCGGGGCCCTGGCCGACGGCCTGCCCGCACACTGGAATATTCAGGCGGTGATCCCCGTGCCGCTGCACGCCGCCC
GGCAGAGGCAGCGCGGCTTCAACCAAGCCGACCTGCTCGCCCGCGCCATCGCCCGGCCCCACGGCCTGCCGGTCCACGCC
GCCCTGACCCGCACCCGCGCCACGCGGCAGCAGGCCCGGCAGCACGCCGCCGACCGCGACGACCTGCACGGCGCCTTCAC
CGTGAACGCCCGGGAGCTGCCGCGGGGCCCGCTCCTCCTGGTGGACGACGTGCTCACGACCGGCCACACCCTGATCGCCT
GCCGGGACGCCCTGCTTCAGGCCGGGGTGGCCCCCGACGACCTCTCCTACGCCGTCATCGCGCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.679

88.936

0.557

Multiple sequence alignment