Detailed information NTG0228154

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DFI_RS02070
• Genome accession: NZ_CP021081
• Coordinates: 417365..418513 (-)
• Length: 382 a.a.
• NCBI ID: WP_027463945.1
• Uniprot ID: A0A221STH7
• Organism: Deinococcus ficus strain CC-FR2-10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 412365..423513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DFI_RS02050 (DFI_02055)	cbiB	413309..414175 (-)	867	WP_027463941.1	adenosylcobinamide-phosphate synthase CbiB	-
DFI_RS02055 (DFI_02060)	-	414172..415500 (-)	1329	WP_027463942.1	cobyrinate a,c-diamide synthase	-
DFI_RS02060 (DFI_02065)	cobO	415496..416110 (-)	615	WP_081425970.1	cob(I)yrinic acid a,c-diamide adenosyltransferase	-
DFI_RS02065 (DFI_02070)	-	416107..416979 (-)	873	WP_027463944.1	ABC transporter substrate-binding protein	-
DFI_RS02070 (DFI_02075)	pilD	417365..418513 (-)	1149	WP_027463945.1	prepilin peptidase	Machinery gene
DFI_RS02075 (DFI_02080)	-	418751..420214 (+)	1464	WP_027463946.1	nitronate monooxygenase	-
DFI_RS02080 (DFI_02085)	-	420358..420948 (+)	591	WP_027463947.1	NADPH-dependent FMN reductase	-
DFI_RS20055	-	421033..421416 (-)	384	WP_155864593.1	hypothetical protein	-
DFI_RS02085 (DFI_02090)	rimO	421456..422940 (-)	1485	WP_027463948.1	30S ribosomal protein S12 methylthiotransferase RimO	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 40204.64 Da
• Isoelectric Point: 7.3469

>NTDB_id=228154 DFI_RS02070 WP_027463945.1 417365..418513(-) (pilD) [Deinococcus ficus strain CC-FR2-10]
MSPDALLVVFAVILGLLVGSFSNVLIWRLPRGENIAFPPSHCPHCDHRLGVQDLVPLGSWLALGGKCRYCRAPIKARYPV
VEALTGLGYGLIAWLFPPLTFGLGALGLMVLFTILLVGSAIDLDTYTIPDELTLPGVGLGLLFALANAQGSGLPTFPEAV
QGALLGAGLLVTINNVGAWVLRRFRERSWPEFPLGYQQISLGLLAGAWLGPWWGAGVALLSALVNALAKKVIRIPELLTL
GGFLVSVMLGGSGLGRDLGAMVVGALGAAGAVALVCGVYWWLHWRRHREDDGAADTDEPVDAQAMGFGDVKLAAVIGAFL
GWELLLVALVVAVFAGAVLGVIQMALHSSNRLKFGPYLAIGAVVALLWGPALVGWYKGLIGL

Nucleotide

• Length: 1149 bp

>NTDB_id=228154 DFI_RS02070 WP_027463945.1 417365..418513(-) (pilD) [Deinococcus ficus strain CC-FR2-10]
GTGAGTCCTGACGCCTTGCTCGTGGTGTTCGCCGTCATCCTGGGGTTGCTGGTCGGGTCGTTCTCGAACGTCCTGATCTG
GCGGCTGCCGCGCGGGGAGAACATCGCCTTCCCGCCCAGCCACTGCCCGCACTGCGACCACCGTCTGGGCGTCCAGGACC
TGGTGCCGCTGGGGTCCTGGCTGGCGCTGGGCGGGAAGTGCCGCTACTGCCGCGCGCCCATCAAGGCGCGCTACCCGGTC
GTGGAGGCGCTGACGGGCCTGGGATACGGGCTGATCGCGTGGCTGTTCCCGCCGCTGACGTTCGGGCTGGGCGCGCTGGG
CCTGATGGTGCTGTTCACGATTCTGCTGGTGGGCAGCGCCATCGACCTGGACACCTACACCATCCCGGACGAGCTGACCC
TGCCGGGCGTGGGGCTGGGCCTGCTGTTCGCCCTGGCGAACGCCCAGGGCAGCGGCCTGCCCACCTTCCCGGAGGCGGTG
CAGGGGGCATTGCTGGGCGCCGGTCTGCTGGTCACGATCAACAACGTGGGCGCCTGGGTGCTGCGGCGCTTCCGGGAGCG
GTCCTGGCCGGAATTCCCGCTGGGGTACCAGCAGATCAGCCTGGGCCTGCTGGCCGGCGCGTGGCTGGGCCCGTGGTGGG
GCGCGGGCGTGGCTCTGCTCTCTGCGCTGGTGAACGCCCTGGCGAAAAAGGTGATTCGCATTCCCGAACTGCTCACGCTG
GGCGGGTTCCTGGTCAGCGTCATGCTGGGCGGCAGCGGCCTGGGCCGGGACCTGGGGGCCATGGTCGTGGGCGCGCTGGG
CGCGGCGGGCGCGGTGGCCCTGGTGTGCGGCGTGTACTGGTGGCTGCACTGGCGCCGCCACCGCGAGGACGACGGCGCCG
CCGACACGGACGAACCGGTGGACGCGCAGGCGATGGGCTTCGGGGACGTGAAGCTGGCCGCGGTGATCGGCGCGTTCCTG
GGCTGGGAACTGCTGCTGGTGGCGCTGGTCGTGGCGGTGTTCGCCGGGGCGGTGCTGGGCGTGATTCAGATGGCGCTGCA
CAGCAGCAACCGCCTGAAGTTTGGGCCGTACCTGGCGATCGGGGCGGTCGTGGCGCTGCTGTGGGGCCCGGCCCTGGTCG
GCTGGTATAAGGGCCTGATCGGGCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (109-225)

• Type IV leader peptidase family (Peptidase_A24) (232-341)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

3D structure

• AlphaFold DB: A0A221STH7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	69.845	100	0.709