Detailed information
Bioinformatically predicted
Overview
| Name | ddrB | Type | Machinery gene |
| Locus tag | DFI_RS00890 | Genome accession | NZ_CP021081 |
| Coordinates | 194269..194817 (-) | Length | 182 a.a. |
| NCBI ID | WP_027463297.1 | Uniprot ID | A0A221SSZ4 |
| Organism | Deinococcus ficus strain CC-FR2-10 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 189269..199817
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DFI_RS00865 (DFI_00865) | - | 189409..190737 (+) | 1329 | WP_027463293.1 | S41 family peptidase | - |
| DFI_RS00870 (DFI_00870) | - | 190774..192024 (-) | 1251 | WP_051307900.1 | MFS transporter | - |
| DFI_RS00875 (DFI_00875) | - | 192061..192969 (+) | 909 | WP_027463295.1 | MBL fold metallo-hydrolase | - |
| DFI_RS00880 (DFI_00880) | - | 193037..193672 (+) | 636 | WP_022800580.1 | Dps family protein | - |
| DFI_RS00885 (DFI_00885) | - | 193751..194212 (+) | 462 | WP_051307901.1 | hypothetical protein | - |
| DFI_RS00890 (DFI_00890) | ddrB | 194269..194817 (-) | 549 | WP_027463297.1 | single-stranded DNA-binding protein | Machinery gene |
| DFI_RS00895 (DFI_00895) | - | 194879..195679 (-) | 801 | WP_043778399.1 | GNAT family N-acetyltransferase | - |
| DFI_RS00900 (DFI_00900) | menC | 195676..196788 (-) | 1113 | WP_027463299.1 | o-succinylbenzoate synthase | - |
| DFI_RS00910 (DFI_00910) | - | 198862..199122 (+) | 261 | WP_022800575.1 | acyl-CoA-binding protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20136.58 Da Isoelectric Point: 7.3993
>NTDB_id=228153 DFI_RS00890 WP_027463297.1 194269..194817(-) (ddrB) [Deinococcus ficus strain CC-FR2-10]
MLHIEFLTDLGAKVTVDVDSADKLLDVQRQYGRLGWTSGQVPVGGYQFPLDNEPDFDWTLIGARKWTNPEGEDMVIHKGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKSTDPDHLREKSDGEFEYVTLAIFRGGKRQERYAIPGGAQGQGSRPAPSAAQR
PAPAPRPAPRPAAAPQDEEAPF
MLHIEFLTDLGAKVTVDVDSADKLLDVQRQYGRLGWTSGQVPVGGYQFPLDNEPDFDWTLIGARKWTNPEGEDMVIHKGH
AYRRRELEAVDSRKMKLPAAVKYSRGAKSTDPDHLREKSDGEFEYVTLAIFRGGKRQERYAIPGGAQGQGSRPAPSAAQR
PAPAPRPAPRPAAAPQDEEAPF
Nucleotide
Download Length: 549 bp
>NTDB_id=228153 DFI_RS00890 WP_027463297.1 194269..194817(-) (ddrB) [Deinococcus ficus strain CC-FR2-10]
ATGCTGCACATTGAATTCCTGACCGACCTGGGCGCCAAAGTCACCGTGGACGTCGACAGCGCCGACAAACTCCTCGACGT
CCAGCGCCAGTACGGCCGCCTCGGCTGGACCAGCGGACAGGTGCCCGTCGGCGGCTACCAGTTCCCCCTCGACAACGAAC
CCGACTTCGACTGGACCCTGATCGGCGCCCGCAAATGGACCAACCCCGAAGGCGAAGACATGGTCATCCACAAGGGCCAC
GCCTACCGCCGCCGCGAACTGGAGGCCGTGGACAGCCGCAAGATGAAACTCCCGGCCGCCGTGAAGTACTCCCGCGGCGC
CAAGAGCACCGACCCCGACCACCTGCGCGAGAAATCCGACGGCGAATTCGAGTACGTGACCCTGGCAATCTTCCGCGGCG
GCAAACGTCAGGAACGCTACGCCATCCCCGGCGGCGCCCAGGGCCAGGGCAGCCGCCCCGCACCGAGCGCCGCCCAGCGG
CCCGCCCCGGCACCCCGCCCCGCCCCGCGCCCAGCCGCCGCCCCGCAGGACGAGGAAGCCCCCTTCTAA
ATGCTGCACATTGAATTCCTGACCGACCTGGGCGCCAAAGTCACCGTGGACGTCGACAGCGCCGACAAACTCCTCGACGT
CCAGCGCCAGTACGGCCGCCTCGGCTGGACCAGCGGACAGGTGCCCGTCGGCGGCTACCAGTTCCCCCTCGACAACGAAC
CCGACTTCGACTGGACCCTGATCGGCGCCCGCAAATGGACCAACCCCGAAGGCGAAGACATGGTCATCCACAAGGGCCAC
GCCTACCGCCGCCGCGAACTGGAGGCCGTGGACAGCCGCAAGATGAAACTCCCGGCCGCCGTGAAGTACTCCCGCGGCGC
CAAGAGCACCGACCCCGACCACCTGCGCGAGAAATCCGACGGCGAATTCGAGTACGTGACCCTGGCAATCTTCCGCGGCG
GCAAACGTCAGGAACGCTACGCCATCCCCGGCGGCGCCCAGGGCCAGGGCAGCCGCCCCGCACCGAGCGCCGCCCAGCGG
CCCGCCCCGGCACCCCGCCCCGCCCCGCGCCCAGCCGCCGCCCCGCAGGACGAGGAAGCCCCCTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ddrB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
76.282 |
85.714 |
0.654 |