Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   B9Z07_RS26305 Genome accession   NZ_CP021069
Coordinates   2043641..2045146 (-) Length   501 a.a.
NCBI ID   WP_034174400.1    Uniprot ID   -
Organism   Burkholderia cenocepacia strain PC184 Mulks     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2038641..2050146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9Z07_RS26280 (B9Z07_26050) - 2039716..2040351 (-) 636 WP_011546241.1 LON peptidase substrate-binding domain-containing protein -
  B9Z07_RS26285 (B9Z07_26055) rapZ 2040379..2041287 (-) 909 WP_006477783.1 RNase adapter RapZ -
  B9Z07_RS26290 (B9Z07_26060) hprK 2041362..2042330 (-) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  B9Z07_RS26295 (B9Z07_26065) - 2042415..2042927 (-) 513 WP_027806888.1 PTS sugar transporter subunit IIA -
  B9Z07_RS26300 (B9Z07_26070) raiA 2043123..2043482 (-) 360 WP_006477786.1 ribosome-associated translation inhibitor RaiA -
  B9Z07_RS26305 (B9Z07_26080) rpoN/rpoN1 2043641..2045146 (-) 1506 WP_034174400.1 RNA polymerase factor sigma-54 Machinery gene
  B9Z07_RS26310 (B9Z07_26085) lptB 2045319..2046095 (-) 777 WP_006477788.1 LPS export ABC transporter ATP-binding protein -
  B9Z07_RS26315 (B9Z07_26090) lptA 2046092..2046757 (-) 666 WP_006477789.1 lipopolysaccharide transport periplasmic protein LptA -
  B9Z07_RS26320 (B9Z07_26095) lptC 2046778..2047392 (-) 615 WP_006477790.1 LPS export ABC transporter periplasmic protein LptC -
  B9Z07_RS26325 (B9Z07_26100) - 2047396..2047932 (-) 537 WP_006477791.1 HAD family hydrolase -
  B9Z07_RS26330 (B9Z07_26105) kdsD 2047932..2048915 (-) 984 WP_006483136.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54785.88 Da        Isoelectric Point: 4.8740

>NTDB_id=228103 B9Z07_RS26305 WP_034174400.1 2043641..2045146(-) (rpoN/rpoN1) [Burkholderia cenocepacia strain PC184 Mulks]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVAADGSLIAQTPPAQNTEPTA
TNGSSTSSDRAERDEPAGADEYDGYGSGDGNDGPQWNLDEYGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQAGP
RDRALVMFLIESLDDDGYLTATLDEVLADLPPELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVVP
RLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=228103 B9Z07_RS26305 WP_034174400.1 2043641..2045146(-) (rpoN/rpoN1) [Burkholderia cenocepacia strain PC184 Mulks]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACATCTTGCGCTGACGCCTCAGCTGCAGCAGTCGATCCGGCTCTTGCA
GTTGTCGACGCTCGAATTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAACCCGCTGCTCGAGAACGACGACGAATGGA
TCGCCAGCCCGCTGCGCGTCGCGGCGGACGGATCGCTGATCGCGCAGACGCCGCCCGCACAGAACACCGAGCCCACCGCG
ACCAACGGCAGCAGCACGTCCAGCGATCGCGCCGAGCGCGACGAGCCGGCCGGCGCCGACGAATACGACGGTTACGGGTC
CGGTGACGGCAACGACGGCCCGCAGTGGAATCTCGACGAATACGGCCGCTCGAGCGGTGCGTCCGACGACGACGACCTGC
CGCCGCTGCAGGTGCAGGAAGCCGCGACGTCGCTGCGCGATCATCTCTCGGCGCAGTTGCGCGTCACGCAGGCCGGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCCACGCTCGACGAAGTGCT
CGCCGACCTGCCGCCCGAACTGGAAATCGACTGCGACGAACTGAACGCGGCGCTCGCGCTGCTGCACAGCTTCGACCCGG
CCGGCGTCGGCGCGCGCTCGGCCTCGGAATGCCTGAAGCTGCAGCTGCTGCGTCTCGATCCGTCCCCCACGCGCACGCTC
GCGCTCGAGATCGTGTCGCAGCATCTCGAATTGCTCGCCGCACGCGACTTCACCCGGTTGCGCAAGCACCTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCCGCCTACGGCAAGGCCGAGG
CCGACTACGTCGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGATGGCTCGCGGAGCTCAATCCGGAGGTCGTCCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCGTCGGCCGGATCGTTGAAACAGCA
GCTGCAGGAAGCGCGCTGGTTGATCAAGAACATCCAGCAGCGTTTCGACACGATCCTGCGTGTCGCGCAGGCTATTGTCG
AGCGTCAGAAGAATTTCTTTGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGGAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTT
CTTCGGATCTCACGTCTCGACCGACACCGGTGGCGCCGCCTCGTCGACCGCCATCCGAGCCCTCATCAAGCAACTGATAG
GAGCTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGTTTCGTGGTCGCGCGC
CGCACGGTTGCGAAATATCGCGAAGCCCTCAAGATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.182

100

0.689

Multiple sequence alignment