Detailed information NTG0228096

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: CAB88_RS28610
• Genome accession: NZ_CP021061
• Coordinates: 5344183..5345310 (+)
• Length: 375 a.a.
• NCBI ID: WP_000470755.1
• Uniprot ID: A0A160GV33
• Organism: Bacillus thuringiensis strain ATCC 10792
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5339183..5350310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAB88_RS28580 (CAB88_28550)	spoIIIJ	5339223..5339990 (-)	768	WP_000726764.1	YidC family membrane integrase SpoIIIJ	-
CAB88_RS28585 (CAB88_28555)	rnpA	5340043..5340390 (-)	348	WP_000726621.1	ribonuclease P protein component	-
CAB88_RS28590 (CAB88_28560)	rpmH	5340467..5340601 (-)	135	WP_000831901.1	50S ribosomal protein L34	-
CAB88_RS28595 (CAB88_28565)	dnaA	5341166..5342506 (+)	1341	WP_000428028.1	chromosomal replication initiator protein DnaA	-
CAB88_RS28600 (CAB88_28570)	dnaN	5342685..5343830 (+)	1146	WP_001212886.1	DNA polymerase III subunit beta	-
CAB88_RS28605 (CAB88_28575)	yaaA	5343958..5344170 (+)	213	WP_000680510.1	S4 domain-containing protein YaaA	-
CAB88_RS28610 (CAB88_28580)	recF	5344183..5345310 (+)	1128	WP_000470755.1	DNA replication/repair protein RecF	Machinery gene
CAB88_RS28615 (CAB88_28585)	gyrB	5345350..5347272 (+)	1923	WP_000435980.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
CAB88_RS28620 (CAB88_28590)	gyrA	5347361..5349832 (+)	2472	WP_001282866.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 43304.63 Da
• Isoelectric Point: 6.7809

>NTDB_id=228096 CAB88_RS28610 WP_000470755.1 5344183..5345310(+) (recF) [Bacillus thuringiensis strain ATCC 10792]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide

• Length: 1128 bp

>NTDB_id=228096 CAB88_RS28610 WP_000470755.1 5344183..5345310(+) (recF) [Bacillus thuringiensis strain ATCC 10792]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACCCTTCAACTAATTGA
GCATGGTGCAAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTACTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

3D structure

• AlphaFold DB: A0A160GV33

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	66.304	98.133	0.651