Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CAB88_RS06040 Genome accession   NZ_CP021061
Coordinates   1128730..1129053 (-) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus thuringiensis strain ATCC 10792     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1123730..1134053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB88_RS06015 (CAB88_05995) - 1124076..1125362 (+) 1287 WP_000247026.1 D-alanyl-D-alanine carboxypeptidase family protein -
  CAB88_RS06020 (CAB88_06000) sipW 1125560..1126129 (+) 570 WP_000767803.1 signal peptidase I SipW -
  CAB88_RS06025 (CAB88_06005) - 1126192..1126779 (+) 588 WP_000172852.1 CalY family protein -
  CAB88_RS06030 (CAB88_06010) - 1126899..1127684 (+) 786 WP_003269889.1 DUF4047 domain-containing protein -
  CAB88_RS06035 (CAB88_06015) calY 1128070..1128663 (+) 594 WP_000053714.1 biofilm matrix protein CalY -
  CAB88_RS06040 (CAB88_06020) sinR 1128730..1129053 (-) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  CAB88_RS06045 (CAB88_06025) - 1129133..1129267 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  CAB88_RS06050 (CAB88_06030) inhA1 1129610..1131997 (+) 2388 WP_001035941.1 M6 family metalloprotease immune inhibitor InhA1 -
  CAB88_RS06055 (CAB88_06035) - 1132169..1133536 (+) 1368 WP_000029061.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=228064 CAB88_RS06040 WP_000578884.1 1128730..1129053(-) (sinR) [Bacillus thuringiensis strain ATCC 10792]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=228064 CAB88_RS06040 WP_000578884.1 1128730..1129053(-) (sinR) [Bacillus thuringiensis strain ATCC 10792]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment