Detailed information NTG0228049

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HV91_RS07435
• Genome accession: NZ_CP026680
• Coordinates: 1529893..1530897 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F5677
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1524893..1535897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV91_RS07405 (HV91_07405)	fghA	1524985..1525836 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HV91_RS07410 (HV91_07410)	ispF	1525907..1526380 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HV91_RS07415 (HV91_07415)	truD	1526377..1527444 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
HV91_RS07420 (HV91_07420)	surE	1527432..1528181 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HV91_RS07425 (HV91_07425)	-	1528214..1528849 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HV91_RS07430 (HV91_07430)	-	1528895..1529788 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
HV91_RS07435 (HV91_07435)	rpoS	1529893..1530897 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HV91_RS07440 (HV91_07440)	fdxA	1531324..1531647 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HV91_RS07445 (HV91_07445)	mutS	1531714..1534281 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
HV91_RS07455 (HV91_07455)	-	1534407..1535414 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=228049 HV91_RS07435 WP_003113871.1 1529893..1530897(+) (rpoS) [Pseudomonas aeruginosa strain F5677]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=228049 HV91_RS07435 WP_003113871.1 1529893..1530897(+) (rpoS) [Pseudomonas aeruginosa strain F5677]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653