Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MCCS_RS11905 Genome accession   NZ_CP021059
Coordinates   2260278..2261639 (-) Length   453 a.a.
NCBI ID   WP_086043531.1    Uniprot ID   A0A1W7AEG9
Organism   Macrococcoides canis strain KM 45013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2255278..2266639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCCS_RS11880 (MCCS_24310) cysE 2255703..2256350 (-) 648 WP_157891125.1 serine O-acetyltransferase -
  MCCS_RS11885 (MCCS_24330) gltX 2256595..2258052 (-) 1458 WP_086043689.1 glutamate--tRNA ligase -
  MCCS_RS11890 (MCCS_24340) ispF 2258067..2258546 (-) 480 WP_086043528.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MCCS_RS11895 (MCCS_24350) ispD 2258543..2259223 (-) 681 WP_086043529.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MCCS_RS11900 (MCCS_24360) - 2259216..2260265 (-) 1050 WP_086043530.1 PIN/TRAM domain-containing protein -
  MCCS_RS11905 (MCCS_24370) radA 2260278..2261639 (-) 1362 WP_086043531.1 DNA repair protein RadA Machinery gene
  MCCS_RS11910 (MCCS_24380) - 2261824..2264250 (-) 2427 WP_086043532.1 ATP-dependent Clp protease ATP-binding subunit -
  MCCS_RS11915 (MCCS_24390) - 2264260..2265264 (-) 1005 WP_086043533.1 protein arginine kinase -
  MCCS_RS11920 (MCCS_24400) - 2265254..2265640 (-) 387 WP_157891126.1 UvrB/UvrC motif-containing protein -
  MCCS_RS11925 (MCCS_24410) - 2265651..2266112 (-) 462 WP_086043535.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50181.81 Da        Isoelectric Point: 7.2378

>NTDB_id=228038 MCCS_RS11905 WP_086043531.1 2260278..2261639(-) (radA) [Macrococcoides canis strain KM 45013]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKNAISESQSDNKVEKLKDITKESVPRDHTQMKELDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAMLSQNHPVLYISGEESVRQTKLRADRLLEDAGELDVYAETNLQIIHETV
KKTKPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMKNTGLKEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNP
RRMASGVDHNRLSLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSVIVSIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNINEALKIAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=228038 MCCS_RS11905 WP_086043531.1 2260278..2261639(-) (radA) [Macrococcoides canis strain KM 45013]
TTGGCAAAGGTGAAAAGTACATTTGAATGTATGGCCTGTGGTTATCAGTCACCGAAATGGATGGGGAAATGTCCGAATTG
TGGTGCATGGAATCAGATGGAAGAAGTTATTGAACATAAACAGAAAGGCCCTAAAAATGCGATTTCTGAATCACAAAGTG
ATAATAAAGTTGAAAAGTTAAAAGATATAACAAAAGAAAGTGTCCCTCGTGATCATACGCAGATGAAAGAACTGGATCGT
GTACTTGGAGGAGGAATTGTTCCGGGTTCATTAATACTTATCGGAGGAGACCCTGGAATTGGGAAATCTACATTGCTGCT
GCAAGTTTGTGCAATGCTTTCTCAAAACCATCCTGTACTTTATATTTCCGGAGAGGAATCCGTAAGACAGACAAAACTAC
GAGCCGATCGTCTTTTAGAGGATGCAGGTGAGCTTGATGTCTATGCAGAAACAAACCTTCAAATTATACACGAAACGGTA
AAGAAAACAAAACCAAAATTTTTAGTTATCGATTCAATTCAAACGATATTTCATCCAGAAGTTACGAGTGCACCGGGCTC
TGTATCGCAAGTCAGAGAATGTACTCAAGAATTAATGCGTATCGCAAAGCAGATGAATATCGCCACATTTATCGTAGGGC
ATGTGACGAAAGAGGGTCAGATTGCAGGTCCAAGATTACTTGAACATATGGTTGATACAGTCCTTTACTTTGAAGGAGAT
ACACATCACAGCTACAGAATATTACGTGCAGTGAAGAATCGTTTTGGTTCAACAAACGAAATGGGTATATTTGAAATGAA
GAATACAGGTCTTAAAGAAGTTCTGAATCCTTCAGAAATGTTCCTTGAAGAACGTACAAAAAATGTAGCGGGTTCGACTA
TTGTTGCAACGATGGAAGGTACGCGACCATTATTGGTTGAAGTTCAGTCGCTTGTAACGCCGACATCCTTTCACAATCCA
AGAAGGATGGCGTCAGGTGTCGATCATAATCGACTGAGTTTACTGATGGCTGTATTGGAGAAAAAACAAGGGTATTTATT
ACAGCAGCAAGATGCATACGTGAAAGTCGCGGGCGGAGTGAAACTTGATGAACCTGCTGTTGATTTAAGTGTTATCGTAA
GTATCGCATCAAGTTATAATGATAAGCCGACACGTGGAGATGACTGCTTTATCGGAGAGGTCGGTCTGACAGGTGAGGTA
AGACGTGTTGCACGTATAGAACAGCGCGTACAAGAGGCTGAGAAGCTCGGTTTTAAACGTGTGATCATCCCTAAAAATAA
TATTGGTGGCTGGGATTTCCCTGGAAATATTGAAGTGATTGGTGTAACAAATATAAACGAAGCATTGAAAATTGCATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

AAA domain (AAA_25)

(66-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7AEG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.671
  radA Streptococcus pneumoniae Rx1

62.996

100

0.631
  radA Streptococcus pneumoniae D39

62.996

100

0.631
  radA Streptococcus pneumoniae R6

62.996

100

0.631
  radA Streptococcus pneumoniae TIGR4

62.996

100

0.631
  radA Streptococcus mitis NCTC 12261

62.996

100

0.631
  radA Streptococcus mitis SK321

62.996

100

0.631

Multiple sequence alignment