Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CA207_RS11565 Genome accession   NZ_CP021058
Coordinates   2186521..2187882 (-) Length   453 a.a.
NCBI ID   WP_015912383.1    Uniprot ID   B9E8S3
Organism   Macrococcoides caseolyticum strain IMD0819     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2181521..2192882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA207_RS11540 (CA207_24060) cysE 2181948..2182601 (-) 654 WP_086039398.1 serine O-acetyltransferase -
  CA207_RS11545 (CA207_24080) gltX 2182838..2184292 (-) 1455 WP_015912379.1 glutamate--tRNA ligase -
  CA207_RS11550 (CA207_24090) ispF 2184310..2184789 (-) 480 WP_086039304.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CA207_RS11555 (CA207_24100) ispD 2184786..2185466 (-) 681 WP_086039305.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CA207_RS11560 (CA207_24110) - 2185459..2186508 (-) 1050 WP_086039306.1 PIN/TRAM domain-containing protein -
  CA207_RS11565 (CA207_24120) radA 2186521..2187882 (-) 1362 WP_015912383.1 DNA repair protein RadA Machinery gene
  CA207_RS11570 (CA207_24130) - 2188107..2190533 (-) 2427 WP_086039307.1 ATP-dependent Clp protease ATP-binding subunit -
  CA207_RS11575 (CA207_24140) - 2190543..2191547 (-) 1005 WP_086039308.1 protein arginine kinase -
  CA207_RS11580 (CA207_24150) - 2191537..2191923 (-) 387 WP_157820247.1 UvrB/UvrC motif-containing protein -
  CA207_RS11585 (CA207_24160) - 2191934..2192395 (-) 462 WP_086039310.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50240.85 Da        Isoelectric Point: 7.2379

>NTDB_id=228004 CA207_RS11565 WP_015912383.1 2186521..2187882(-) (radA) [Macrococcoides caseolyticum strain IMD0819]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKNAISESQSDNKVEKLKDITKESVPRDHTQMKELDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAMLSQNHPVLYISGEESVRQTKLRADRLLEDAGELDVYAETNLQIIHETV
KRSKPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRILRAVKNRFGSTNEMGIFEMKNTGLKEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNP
RRMASGVDHNRLNLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSVIVSIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVIGVTNINEALKMAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=228004 CA207_RS11565 WP_015912383.1 2186521..2187882(-) (radA) [Macrococcoides caseolyticum strain IMD0819]
TTGGCAAAGGTGAAAAGTACATTTGAATGTATGGCCTGTGGTTATCAGTCACCGAAATGGATGGGAAAATGTCCGAATTG
TGGTGCATGGAATCAAATGGAAGAAGTTATTGAACATAAACAGAAGGGTCCTAAAAATGCGATTTCTGAATCACAAAGTG
ATAATAAAGTTGAAAAACTAAAAGATATAACGAAAGAAAGTGTTCCTCGTGATCATACGCAGATGAAAGAACTAGATCGT
GTACTTGGAGGAGGAATCGTTCCCGGTTCATTGATACTTATCGGTGGAGACCCAGGGATTGGGAAATCCACATTACTACT
ACAAGTTTGTGCAATGCTTTCACAAAACCATCCCGTACTTTATATTTCTGGAGAGGAATCGGTAAGACAAACGAAACTAC
GTGCCGATCGTCTATTAGAGGATGCAGGGGAGCTTGATGTCTATGCAGAAACCAACCTTCAGATTATTCACGAAACGGTA
AAACGATCGAAACCGAAATTTTTAGTTATCGATTCAATTCAAACAATATTTCATCCAGAGGTTACAAGTGCACCTGGTTC
TGTATCGCAAGTTAGAGAATGTACACAAGAGTTAATGCGTATTGCAAAGCAGATGAACATTGCAACATTTATCGTAGGGC
ACGTAACAAAAGAAGGACAGATCGCAGGTCCAAGGCTACTAGAACATATGGTTGATACAGTTCTTTACTTTGAAGGAGAC
ACCCATCACAGCTACAGAATATTACGCGCGGTGAAGAATCGTTTTGGTTCGACAAATGAAATGGGTATATTTGAAATGAA
GAATACAGGCCTTAAAGAAGTGCTGAACCCTTCAGAAATGTTCCTTGAAGAACGTACAAAAAATGTAGCGGGTTCAACTA
TCGTTGCAACGATGGAAGGCACGCGCCCATTACTAGTGGAAGTTCAGTCACTTGTAACGCCGACATCCTTTCATAACCCA
AGAAGAATGGCATCAGGTGTCGACCATAATCGACTGAACCTATTGATGGCTGTACTAGAGAAAAAACAAGGATATTTATT
ACAGCAACAGGATGCATATGTGAAAGTTGCGGGCGGTGTAAAACTTGATGAACCTGCTGTTGATTTAAGTGTTATCGTAA
GCATCGCTTCAAGCTATAATGATAAACCGACACGAGGCGATGACTGTTTTATCGGAGAAGTCGGTCTGACTGGTGAAGTG
AGACGTGTTGCGCGTATTGAACAACGTGTACAAGAAGCTGAAAAACTCGGTTTTAAACGTGTCATCATCCCAAAAAATAA
TATTGGTGGCTGGGATTTCCCCGGAAATATTGAAGTGATTGGTGTAACAAATATTAACGAAGCATTAAAAATGGCATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9E8S3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.447

100

0.669
  radA Streptococcus pneumoniae Rx1

62.996

100

0.631
  radA Streptococcus pneumoniae D39

62.996

100

0.631
  radA Streptococcus pneumoniae R6

62.996

100

0.631
  radA Streptococcus pneumoniae TIGR4

62.996

100

0.631
  radA Streptococcus mitis NCTC 12261

62.996

100

0.631
  radA Streptococcus mitis SK321

62.996

100

0.631

Multiple sequence alignment