Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BL14DL4_RS07095 Genome accession   NZ_CP026673
Coordinates   1298267..1298740 (-) Length   157 a.a.
NCBI ID   WP_003184615.1    Uniprot ID   Q65FU5
Organism   Bacillus licheniformis strain 14ADL4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1293267..1303740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL14DL4_RS07055 (BL14DL4_01408) - 1293780..1294568 (+) 789 WP_003184598.1 ABC transporter ATP-binding protein -
  BL14DL4_RS07060 (BL14DL4_01409) - 1294531..1295355 (+) 825 WP_009329424.1 ABC transporter permease -
  BL14DL4_RS07065 (BL14DL4_01410) ytkD 1295386..1295862 (-) 477 WP_003184602.1 RNA deprotection pyrophosphohydrolase -
  BL14DL4_RS07070 (BL14DL4_01411) - 1296057..1296380 (-) 324 WP_003184604.1 hypothetical protein -
  BL14DL4_RS07075 (BL14DL4_01412) - 1296428..1296832 (-) 405 WP_003184607.1 holin family protein -
  BL14DL4_RS07080 (BL14DL4_01413) - 1296984..1297421 (-) 438 WP_003184609.1 Dps family protein -
  BL14DL4_RS07085 (BL14DL4_01414) ytzI 1297555..1297698 (+) 144 WP_011201722.1 YtzI protein -
  BL14DL4_RS07090 (BL14DL4_01415) - 1297692..1298135 (-) 444 WP_003184613.1 FixH family protein -
  BL14DL4_RS07095 (BL14DL4_01416) luxS 1298267..1298740 (-) 474 WP_003184615.1 S-ribosylhomocysteine lyase Regulator
  BL14DL4_RS07100 (BL14DL4_01417) yidD 1298878..1299105 (+) 228 WP_003184617.1 membrane protein insertion efficiency factor YidD -
  BL14DL4_RS07105 (BL14DL4_01418) - 1299102..1299671 (-) 570 WP_003184618.1 beta-class carbonic anhydrase -
  BL14DL4_RS07110 (BL14DL4_01419) - 1299798..1300979 (+) 1182 WP_003184620.1 GTP-binding protein -
  BL14DL4_RS07115 (BL14DL4_01420) - 1301078..1302118 (+) 1041 WP_069500720.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  BL14DL4_RS07120 (BL14DL4_01421) - 1302204..1302449 (-) 246 WP_003184624.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17885.47 Da        Isoelectric Point: 5.5531

>NTDB_id=227930 BL14DL4_RS07095 WP_003184615.1 1298267..1298740(-) (luxS) [Bacillus licheniformis strain 14ADL4]
MPSVESFELDHNAVKAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRTYAEKYDHFDIIDIS
PMGCQTGYYLVVSGEPKVEEIVDLLEDTFKEAVEVTEIPAANEKQCGQAKLHDLEGAKRMMRFWLSQNKEDLLKVFG

Nucleotide


Download         Length: 474 bp        

>NTDB_id=227930 BL14DL4_RS07095 WP_003184615.1 1298267..1298740(-) (luxS) [Bacillus licheniformis strain 14ADL4]
ATGCCTTCAGTTGAAAGTTTTGAGCTTGACCATAATGCGGTAAAAGCGCCTTATGTCAGACACTGCGGCGTCCACAAAGT
GGGAACGGACGGCGTCGTCAACAAGTTTGACATCCGTTTTTGCCAGCCGAATAAACAGGCAATGAAACCTGATACGATTC
ATACTTTGGAGCACCTTCTTGCATTTACAATCCGCACATATGCGGAAAAATATGACCACTTTGATATTATCGACATTTCG
CCGATGGGCTGCCAAACGGGCTATTACCTGGTGGTAAGCGGTGAGCCGAAAGTGGAAGAAATCGTTGATTTGCTTGAGGA
TACGTTCAAAGAAGCCGTTGAAGTGACTGAAATTCCGGCGGCTAACGAAAAACAGTGCGGCCAGGCAAAGCTTCACGATC
TTGAAGGCGCAAAGCGCATGATGCGTTTTTGGCTTTCGCAAAATAAAGAAGACCTGCTCAAGGTGTTTGGGTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65FU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

35.802

100

0.369