Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B6257_RS17220 Genome accession   NZ_CP021011
Coordinates   3306544..3306828 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain GFP-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3301544..3311828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS17195 (B6257_17100) - 3302789..3303697 (+) 909 WP_101562974.1 ketopantoate reductase family protein -
  B6257_RS17200 (B6257_17105) - 3303728..3304960 (-) 1233 WP_070081754.1 aminopeptidase -
  B6257_RS17205 - 3305061..3305195 (-) 135 WP_003154559.1 protein YkpC -
  B6257_RS17210 (B6257_17110) mreBH 3305267..3306274 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  B6257_RS17220 (B6257_17120) abrB 3306544..3306828 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  B6257_RS17225 (B6257_17125) - 3307001..3308305 (+) 1305 WP_014304932.1 ATP-binding protein -
  B6257_RS17230 (B6257_17130) - 3308307..3309134 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  B6257_RS17235 (B6257_17135) ktrC 3309175..3309840 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  B6257_RS17240 (B6257_17140) ade 3309989..3311722 (+) 1734 WP_101562975.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=227844 B6257_RS17220 WP_024085249.1 3306544..3306828(+) (abrB) [Bacillus velezensis strain GFP-2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=227844 B6257_RS17220 WP_024085249.1 3306544..3306828(+) (abrB) [Bacillus velezensis strain GFP-2]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment