Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   B6257_RS17105 Genome accession   NZ_CP021011
Coordinates   3286045..3286641 (+) Length   198 a.a.
NCBI ID   WP_101562971.1    Uniprot ID   -
Organism   Bacillus velezensis strain GFP-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3281045..3291641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS17075 (B6257_16980) - 3281260..3281715 (+) 456 WP_071391903.1 flavodoxin -
  B6257_RS17080 (B6257_16985) dapD 3281797..3282507 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  B6257_RS17085 (B6257_16990) - 3282578..3283702 (+) 1125 WP_101562970.1 N-acetyldiaminopimelate deacetylase -
  B6257_RS17090 (B6257_16995) - 3283763..3284008 (+) 246 WP_003154596.1 YkuS family protein -
  B6257_RS17095 (B6257_17000) - 3284042..3284848 (-) 807 WP_060386912.1 mechanosensitive ion channel family protein -
  B6257_RS17100 (B6257_17005) - 3285135..3285593 (+) 459 WP_071391901.1 redoxin domain-containing protein -
  B6257_RS17105 (B6257_17010) rok 3286045..3286641 (+) 597 WP_101562971.1 transcriptional regulator Rok Regulator
  B6257_RS17110 (B6257_17015) - 3286662..3287654 (-) 993 WP_069473386.1 sporulation protein -
  B6257_RS17115 (B6257_17020) - 3287800..3288402 (+) 603 WP_071391898.1 molybdenum cofactor guanylyltransferase -
  B6257_RS17120 (B6257_17025) - 3288454..3289473 (+) 1020 WP_071391897.1 molybdopterin-synthase adenylyltransferase MoeB -
  B6257_RS17125 (B6257_17030) glp 3289491..3290783 (+) 1293 WP_071391896.1 gephyrin-like molybdotransferase Glp -
  B6257_RS17130 (B6257_17035) mobB 3290744..3291265 (+) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22641.65 Da        Isoelectric Point: 9.4832

>NTDB_id=227843 B6257_RS17105 WP_101562971.1 3286045..3286641(+) (rok) [Bacillus velezensis strain GFP-2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYEKLRELDNTGSLSDTKKEFRPEKKNDSLPVLAELAAQEMRSYQKPQ
TQPQSSQQQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=227843 B6257_RS17105 WP_101562971.1 3286045..3286641(+) (rok) [Bacillus velezensis strain GFP-2]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGAAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAATGACTCCCTCCCGGTACTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCAGCAGATGCAGTCTATTACGTCTCTTCCCGCAGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCGAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

87.113

97.98

0.854

Multiple sequence alignment