Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   B6257_RS15395 Genome accession   NZ_CP021011
Coordinates   2969050..2969628 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain GFP-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2964050..2974628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS20470 - 2964550..2965065 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  B6257_RS20475 - 2965357..2966049 (-) 693 Protein_2951 protoglobin domain-containing protein -
  B6257_RS15380 (B6257_15300) - 2965965..2967488 (-) 1524 WP_101562871.1 FAD-dependent oxidoreductase -
  B6257_RS15385 (B6257_15305) - 2967613..2968470 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  B6257_RS15390 (B6257_15310) - 2968501..2968734 (-) 234 WP_003155181.1 IDEAL domain-containing protein -
  B6257_RS15395 (B6257_15315) comK 2969050..2969628 (+) 579 WP_003155179.1 competence protein ComK Regulator
  B6257_RS15400 (B6257_15320) - 2969756..2969941 (+) 186 WP_072588961.1 hypothetical protein -
  B6257_RS15405 (B6257_15325) - 2969945..2971321 (+) 1377 WP_101562872.1 hypothetical protein -
  B6257_RS15410 (B6257_15330) - 2971970..2972338 (+) 369 WP_003155175.1 iron chaperone -
  B6257_RS15415 (B6257_15335) - 2972365..2972736 (+) 372 WP_077722024.1 iron chaperone -
  B6257_RS15420 (B6257_15340) - 2972870..2973580 (-) 711 WP_003155170.1 YrpD family protein -
  B6257_RS15425 (B6257_15345) - 2973776..2974045 (+) 270 WP_071392024.1 excalibur calcium-binding domain-containing protein -
  B6257_RS15430 (B6257_15350) - 2974078..2974395 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=227831 B6257_RS15395 WP_003155179.1 2969050..2969628(+) (comK) [Bacillus velezensis strain GFP-2]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=227831 B6257_RS15395 WP_003155179.1 2969050..2969628(+) (comK) [Bacillus velezensis strain GFP-2]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCAGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment