Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   B6257_RS11940 Genome accession   NZ_CP021011
Coordinates   2319685..2319804 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain GFP-2     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2314685..2324804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS11925 (B6257_11860) - 2316297..2316980 (+) 684 WP_014416901.1 response regulator transcription factor -
  B6257_RS11930 (B6257_11865) - 2316967..2318400 (+) 1434 WP_187297950.1 sensor histidine kinase -
  B6257_RS11935 (B6257_11870) rapC 2318553..2319701 (+) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  B6257_RS11940 (B6257_11875) phrC 2319685..2319804 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  B6257_RS11945 (B6257_11880) - 2319955..2320065 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  B6257_RS11950 (B6257_11885) - 2320145..2321509 (-) 1365 WP_101562697.1 aspartate kinase -
  B6257_RS11960 (B6257_11895) ceuB 2321924..2322877 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  B6257_RS11965 (B6257_11900) - 2322867..2323814 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  B6257_RS11970 (B6257_11905) - 2323808..2324566 (+) 759 WP_071392129.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=227823 B6257_RS11940 WP_003156334.1 2319685..2319804(+) (phrC) [Bacillus velezensis strain GFP-2]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=227823 B6257_RS11940 WP_003156334.1 2319685..2319804(+) (phrC) [Bacillus velezensis strain GFP-2]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718

Multiple sequence alignment