Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C4N11_RS05675 Genome accession   NZ_CP026670
Coordinates   1076784..1078451 (-) Length   555 a.a.
NCBI ID   WP_000923593.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain endophthalmitis isolate 335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1071784..1083451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4N11_RS05650 (C4N11_05650) - 1072112..1072916 (-) 805 Protein_1061 IS5 family transposase -
  C4N11_RS05655 (C4N11_05655) - 1072924..1073225 (-) 302 Protein_1062 PTS fructose transporter subunit IIB -
  C4N11_RS05660 (C4N11_05660) - 1073263..1073739 (-) 477 WP_000242183.1 PTS sugar transporter subunit IIA -
  C4N11_RS12600 - 1073919..1074071 (+) 153 WP_001814238.1 hypothetical protein -
  C4N11_RS05665 (C4N11_05665) lepA 1074152..1075975 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  C4N11_RS05670 (C4N11_05670) - 1076054..1076782 (-) 729 WP_000133341.1 metallophosphoesterase family protein -
  C4N11_RS05675 (C4N11_05675) recN 1076784..1078451 (-) 1668 WP_000923593.1 DNA repair protein RecN Machinery gene
  C4N11_RS05680 (C4N11_05680) - 1078458..1078889 (-) 432 WP_001034415.1 arginine repressor -
  C4N11_RS05685 (C4N11_05685) - 1078882..1079697 (-) 816 WP_001041072.1 TlyA family RNA methyltransferase -
  C4N11_RS05690 (C4N11_05690) - 1079690..1080565 (-) 876 WP_000743813.1 polyprenyl synthetase family protein -
  C4N11_RS05695 (C4N11_05695) - 1080562..1080774 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  C4N11_RS05700 (C4N11_05700) xseA 1080752..1082092 (-) 1341 WP_000417468.1 exodeoxyribonuclease VII large subunit -
  C4N11_RS05705 (C4N11_05705) udk 1082220..1082858 (-) 639 WP_001181378.1 uridine kinase -
  C4N11_RS05715 (C4N11_05715) - 1082966..1083268 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62822.25 Da        Isoelectric Point: 4.6517

>NTDB_id=227812 C4N11_RS05675 WP_000923593.1 1076784..1078451(-) (recN) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRTIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=227812 C4N11_RS05675 WP_000923593.1 1076784..1078451(-) (recN) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAAGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAACTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAAGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44