Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B6257_RS08365 Genome accession   NZ_CP021011
Coordinates   1602180..1602461 (-) Length   93 a.a.
NCBI ID   WP_101562533.1    Uniprot ID   -
Organism   Bacillus velezensis strain GFP-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597180..1607461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS08350 (B6257_08300) - 1598795..1600081 (-) 1287 WP_015387545.1 Glu/Leu/Phe/Val family dehydrogenase -
  B6257_RS08355 (B6257_08305) - 1600312..1601247 (-) 936 WP_101562531.1 sensor histidine kinase -
  B6257_RS08360 (B6257_08310) - 1601248..1601946 (-) 699 WP_101562532.1 response regulator transcription factor -
  B6257_RS08365 (B6257_08315) abrB 1602180..1602461 (-) 282 WP_101562533.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  B6257_RS08370 (B6257_08320) - 1602674..1603543 (-) 870 WP_101562534.1 DUF4097 family beta strand repeat-containing protein -
  B6257_RS08375 (B6257_08325) - 1603582..1604286 (-) 705 WP_101562535.1 ABC transporter permease -
  B6257_RS08380 (B6257_08330) - 1604384..1605307 (-) 924 WP_064108088.1 ABC transporter ATP-binding protein -
  B6257_RS08385 (B6257_08335) - 1605529..1606182 (-) 654 WP_101562536.1 DUF6875 domain-containing protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10536.40 Da        Isoelectric Point: 8.5042

>NTDB_id=227810 B6257_RS08365 WP_101562533.1 1602180..1602461(-) (abrB) [Bacillus velezensis strain GFP-2]
MKSTGIARKVDRLGRIVLPKELRDASGIEVNTLMEIFIRGEEIVLKKYAPYSRCVVTGEASERNLSLLQGQLCLSPECAW
KVVRELECLFPRN

Nucleotide


Download         Length: 282 bp        

>NTDB_id=227810 B6257_RS08365 WP_101562533.1 1602180..1602461(-) (abrB) [Bacillus velezensis strain GFP-2]
ATGAAATCTACCGGAATTGCAAGAAAAGTAGATCGTTTGGGAAGAATTGTATTACCAAAAGAGCTGCGTGATGCCAGTGG
TATAGAAGTAAATACATTAATGGAAATATTTATTAGAGGAGAAGAGATTGTTCTAAAGAAGTATGCGCCTTATAGTAGAT
GTGTAGTTACCGGTGAAGCTTCAGAACGTAATTTATCCCTTTTGCAGGGCCAGTTATGTTTAAGTCCTGAATGTGCATGG
AAAGTAGTTCGAGAATTGGAATGTCTTTTTCCAAGGAATTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(54-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.724

93.548

0.484

Multiple sequence alignment