Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   C4N11_RS05490 Genome accession   NZ_CP026670
Coordinates   1039515..1040585 (+) Length   356 a.a.
NCBI ID   WP_000817884.1    Uniprot ID   C1C7D0
Organism   Streptococcus pneumoniae strain endophthalmitis isolate 335     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1034515..1045585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4N11_RS05475 (C4N11_05475) ylqF 1035748..1036599 (+) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  C4N11_RS05480 (C4N11_05480) - 1036586..1037365 (+) 780 WP_000201099.1 ribonuclease HII -
  C4N11_RS05485 (C4N11_05485) - 1037381..1038931 (+) 1551 WP_000392544.1 ClC family H(+)/Cl(-) exchange transporter -
  C4N11_RS05490 (C4N11_05490) xerS 1039515..1040585 (+) 1071 WP_000817884.1 tyrosine recombinase XerS Machinery gene
  C4N11_RS05495 (C4N11_05495) - 1040650..1041639 (-) 990 WP_000873991.1 lipoate--protein ligase -
  C4N11_RS05500 (C4N11_05500) lpdA 1041703..1043406 (-) 1704 WP_001162928.1 dihydrolipoyl dehydrogenase -
  C4N11_RS05505 (C4N11_05505) - 1043452..1044495 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41144.18 Da        Isoelectric Point: 9.6220

>NTDB_id=227810 C4N11_RS05490 WP_000817884.1 1039515..1040585(+) (xerS) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=227810 C4N11_RS05490 WP_000817884.1 1039515..1040585(+) (xerS) [Streptococcus pneumoniae strain endophthalmitis isolate 335]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGTGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1C7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997

Multiple sequence alignment