Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   B6257_RS03370 Genome accession   NZ_CP021011
Coordinates   643175..643927 (-) Length   250 a.a.
NCBI ID   WP_101562318.1    Uniprot ID   -
Organism   Bacillus velezensis strain GFP-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 638175..648927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS03345 (B6257_03330) mreC 638611..639474 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  B6257_RS03350 (B6257_03335) mreB 639505..640518 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  B6257_RS03355 (B6257_03340) radC 640610..641305 (-) 696 WP_007408165.1 RadC family protein -
  B6257_RS03360 (B6257_03345) - 641337..641906 (-) 570 WP_070082167.1 Maf family protein -
  B6257_RS03365 (B6257_03350) - 642047..643048 (-) 1002 WP_070082168.1 SPOR domain-containing protein -
  B6257_RS03370 (B6257_03355) comC 643175..643927 (-) 753 WP_101562318.1 prepilin peptidase Machinery gene
  B6257_RS03375 (B6257_03360) - 644067..645359 (-) 1293 WP_101562319.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  B6257_RS03380 (B6257_03365) - 645418..648060 (-) 2643 WP_101562320.1 valine--tRNA ligase -
  B6257_RS03385 (B6257_03370) - 648513..648704 (+) 192 WP_060674742.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27140.79 Da        Isoelectric Point: 9.2521

>NTDB_id=227791 B6257_RS03370 WP_101562318.1 643175..643927(-) (comC) [Bacillus velezensis strain GFP-2]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLTLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=227791 B6257_RS03370 WP_101562318.1 643175..643927(-) (comC) [Bacillus velezensis strain GFP-2]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGACGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGTCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment