Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   B6257_RS02410 Genome accession   NZ_CP021011
Coordinates   462380..463147 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain GFP-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 457380..468147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6257_RS02390 (B6257_02370) - 457582..458394 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  B6257_RS02395 (B6257_02375) ccpN 458420..459058 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  B6257_RS02400 (B6257_02380) glyS 459159..461198 (-) 2040 WP_101562278.1 glycine--tRNA ligase subunit beta -
  B6257_RS02405 (B6257_02385) glyQ 461191..462078 (-) 888 WP_101562279.1 glycine--tRNA ligase subunit alpha -
  B6257_RS02410 (B6257_02390) recO 462380..463147 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  B6257_RS02415 (B6257_02395) - 463184..463327 (-) 144 WP_007408286.1 YqzL family protein -
  B6257_RS02420 (B6257_02400) era 463483..464388 (-) 906 WP_007408285.1 GTPase Era -
  B6257_RS02425 (B6257_02405) - 464369..464779 (-) 411 WP_003152976.1 cytidine deaminase -
  B6257_RS02430 (B6257_02410) - 464903..465277 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  B6257_RS02435 (B6257_02415) ybeY 465258..465731 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  B6257_RS02440 (B6257_02420) - 465732..467864 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=227784 B6257_RS02410 WP_003152982.1 462380..463147(-) (recO) [Bacillus velezensis strain GFP-2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=227784 B6257_RS02410 WP_003152982.1 462380..463147(-) (recO) [Bacillus velezensis strain GFP-2]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTACAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment