Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VP_RS18595 Genome accession   NC_004605
Coordinates   738424..739605 (-) Length   393 a.a.
NCBI ID   WP_005481314.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus RIMD 2210633     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 733424..744605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP_RS18580 (VPA0708) - 734727..735275 (+) 549 WP_005481267.1 GNAT family N-acetyltransferase -
  VP_RS18585 (VPA0709) - 735361..735978 (-) 618 WP_005481262.1 HAD family phosphatase -
  VP_RS18590 (VPA0710) cqsS 736298..738346 (+) 2049 WP_011106329.1 hybrid sensor histidine kinase/response regulator Regulator
  VP_RS18595 (VPA0711) cqsA 738424..739605 (-) 1182 WP_005481314.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VP_RS18600 (VPA0712) ylqF 739959..740903 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  VP_RS18605 (VPA0713) - 741193..741930 (-) 738 WP_005481296.1 EAL domain-containing protein -
  VP_RS18610 (VPA0714) - 742110..744311 (-) 2202 WP_005481315.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43838.17 Da        Isoelectric Point: 6.4984

>NTDB_id=22772 VP_RS18595 WP_005481314.1 738424..739605(-) (cqsA) [Vibrio parahaemolyticus RIMD 2210633]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPEGSGLLQKLGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=22772 VP_RS18595 WP_005481314.1 738424..739605(-) (cqsA) [Vibrio parahaemolyticus RIMD 2210633]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCGGCCTTTGAGCACCAACTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAGAGGGGTCTGGATTATTACAAAAACTGGGACTGACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.398

98.473

0.575

Multiple sequence alignment