Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC82_RS09020 Genome accession   NZ_CP026641
Coordinates   1870645..1872072 (-) Length   475 a.a.
NCBI ID   WP_000980610.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_082     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1865645..1877072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC82_RS08990 (FORC82_1873) yeeZ 1865701..1866525 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  FORC82_RS08995 (FORC82_1874) yeeY 1866571..1867500 (+) 930 WP_000803374.1 LysR substrate-binding domain-containing protein -
  FORC82_RS09000 yoeI 1867714..1867776 (+) 63 WP_010723108.1 membrane protein YoeI -
  FORC82_RS09005 (FORC82_1875) plaP 1867766..1869124 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FORC82_RS09010 (FORC82_1876) tsuA 1869303..1870361 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  FORC82_RS09015 (FORC82_1877) tsuB 1870375..1870602 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FORC82_RS09020 (FORC82_1878) sbcB 1870645..1872072 (-) 1428 WP_000980610.1 exodeoxyribonuclease I Machinery gene
  FORC82_RS09025 (FORC82_1879) dacD 1872281..1873447 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FORC82_RS09030 (FORC82_1880) sbmC 1873566..1874039 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  FORC82_RS09035 (FORC82_1881) yeeA 1874238..1875296 (+) 1059 WP_001200890.1 FUSC family protein -
  FORC82_RS09040 (FORC82_1883) tmaR 1875468..1875797 (+) 330 WP_000450409.1 DUF496 family protein -
  FORC82_RS09045 - 1875898..1876080 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FORC82_RS09050 - 1876134..1876280 (+) 147 Protein_1758 transposase domain-containing protein -
  FORC82_RS09055 (FORC82_1884) - 1876569..1876649 (-) 81 Protein_1759 hypothetical protein -
  FORC82_RS09060 (FORC82_1885) yeeW 1876695..1876889 (-) 195 WP_000988600.1 DUF5983 family protein -
  FORC82_RS09065 cbtA 1876886..1877011 (-) 126 Protein_1761 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=227637 FORC82_RS09020 WP_000980610.1 1870645..1872072(-) (sbcB) [Escherichia coli strain FORC_082]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=227637 FORC82_RS09020 WP_000980610.1 1870645..1872072(-) (sbcB) [Escherichia coli strain FORC_082]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment