Detailed information NTG0227624

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC82_RS05265
• Genome accession: NZ_CP026641
• Coordinates: 1094339..1095331 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FORC_082
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1089339..1100331

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC82_RS05235 (FORC82_1098)	ispD	1089400..1090110 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC82_RS05240 (FORC82_1099)	ispF	1090110..1090589 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC82_RS05245 (FORC82_1100)	truD	1090586..1091635 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FORC82_RS05250 (FORC82_1101)	surE	1091616..1092377 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FORC82_RS05255 (FORC82_1102)	pcm	1092371..1092997 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FORC82_RS05260 (FORC82_1103)	nlpD	1093182..1094276 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
FORC82_RS05265 (FORC82_1104)	rpoS	1094339..1095331 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FORC82_RS05270 (FORC82_1105)	ygbN	1095425..1096789 (-)	1365	WP_000104459.1	GntP family transporter	-
FORC82_RS05275 (FORC82_1106)	ygbM	1096877..1097653 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
FORC82_RS05280 (FORC82_1107)	ygbL	1097658..1098296 (-)	639	WP_001278994.1	aldolase	-
FORC82_RS05285 (FORC82_1108)	otnK	1098293..1099555 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=227624 FORC82_RS05265 WP_000081550.1 1094339..1095331(+) (rpoS) [Escherichia coli strain FORC_082]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=227624 FORC82_RS05265 WP_000081550.1 1094339..1095331(+) (rpoS) [Escherichia coli strain FORC_082]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715