Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   FORC82_RS03835 Genome accession   NZ_CP026641
Coordinates   791980..793179 (-) Length   399 a.a.
NCBI ID   WP_004018097.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_082     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 786980..798179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC82_RS03825 (FORC82_0796) - 787302..791051 (+) 3750 WP_000694258.1 CDP-glycerol glycerophosphotransferase family protein -
  FORC82_RS03830 (FORC82_0797) - 791146..791934 (+) 789 WP_000150096.1 acyltransferase -
  FORC82_RS03835 (FORC82_0798) kpsS 791980..793179 (-) 1200 WP_004018097.1 capsular biosynthesis protein Regulator
  FORC82_RS03840 (FORC82_0799) - 793214..795241 (-) 2028 WP_129501457.1 capsular polysaccharide biosynthesis protein -
  FORC82_RS03845 (FORC82_0800) kdsB 795238..795978 (-) 741 WP_000030755.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FORC82_RS03850 (FORC82_0801) - 795988..797664 (-) 1677 WP_122999298.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 47701.29 Da        Isoelectric Point: 10.1063

>NTDB_id=227619 FORC82_RS03835 WP_004018097.1 791980..793179(-) (kpsS) [Escherichia coli strain FORC_082]
MQGNALTVLLSGKKYLLLQGPMGPFFNNVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNAVYYCTLIHLFKIY

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=227619 FORC82_RS03835 WP_004018097.1 791980..793179(-) (kpsS) [Escherichia coli strain FORC_082]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TAACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAACGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGGTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGTCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGCTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGATGAAGACCCAGGTTAATGCGGTTTATTATTGCACACTCATACATTTGTTTAAAATTTATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.494

0.388

Multiple sequence alignment