Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   VP_RS12720 Genome accession   NC_004603
Coordinates   2758255..2759295 (-) Length   346 a.a.
NCBI ID   WP_005461712.1    Uniprot ID   Q87LJ7
Organism   Vibrio parahaemolyticus RIMD 2210633     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2753255..2764295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP_RS12690 (VP2609) dns 2753426..2754121 (+) 696 WP_005461720.1 deoxyribonuclease I Auxiliary factor
  VP_RS12695 (VP2610) rsmE 2754246..2754977 (+) 732 WP_005461719.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  VP_RS12700 (VP2611) gshB 2754992..2755942 (+) 951 WP_005482451.1 glutathione synthase -
  VP_RS12705 (VP2612) - 2756056..2756619 (+) 564 WP_005461717.1 YqgE/AlgH family protein -
  VP_RS12710 (VP2613) ruvX 2756668..2757093 (+) 426 WP_005461715.1 Holliday junction resolvase RuvX -
  VP_RS12715 (VP2614) pilU 2757118..2758224 (-) 1107 WP_005461714.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  VP_RS12720 (VP2615) pilT 2758255..2759295 (-) 1041 WP_005461712.1 type IV pilus twitching motility protein PilT Machinery gene
  VP_RS12725 (VP2616) - 2759324..2760037 (+) 714 WP_005461710.1 YggS family pyridoxal phosphate-dependent enzyme -
  VP_RS12730 (VP2617) proC 2760157..2760975 (+) 819 WP_005482485.1 pyrroline-5-carboxylate reductase -
  VP_RS12735 (VP2618) - 2761028..2761585 (+) 558 WP_005482440.1 YggT family protein -
  VP_RS12740 (VP2619) yggU 2761585..2761875 (+) 291 WP_005482461.1 DUF167 family protein YggU -
  VP_RS12745 (VP2620) - 2762003..2762434 (+) 432 WP_005461703.1 DUF4426 domain-containing protein -
  VP_RS12750 (VP2621) - 2762552..2763154 (+) 603 WP_005482459.1 XTP/dITP diphosphatase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38562.05 Da        Isoelectric Point: 6.5039

>NTDB_id=22758 VP_RS12720 WP_005461712.1 2758255..2759295(-) (pilT) [Vibrio parahaemolyticus RIMD 2210633]
MDITELLDFSVKHNASDLHLSAGVPPMVRIDGDVRKLGIPAFTHQEVHRLVFEIMNDAQRSEFEEKLEVDFSFELHNVGR
FRVNAFNQSRGCAAVFRTIPSSIPTLEELEAPEIFKKIANAEKGLVLVTGPTGSGKSTTLAAIVDYINRNHNKHILTIED
PIEFVHNNNKCLINQREVHRDTHSFQNALRSALREDPDVILVGEMRDKETISLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGSDKDMVRSMLSESLRSVIAQKLLKRNGGGRIACHEIMMATPAIRNLIREDKVAQMYSIIQTGAAHGMQTMEQNA
RQLMAQGMVSREEVDSKIGLEVQQFS

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=22758 VP_RS12720 WP_005461712.1 2758255..2759295(-) (pilT) [Vibrio parahaemolyticus RIMD 2210633]
ATGGATATCACTGAGTTACTGGATTTTAGTGTAAAACATAATGCTTCGGATCTACATCTTTCTGCAGGTGTACCACCAAT
GGTTCGTATTGATGGTGATGTGAGAAAACTGGGCATTCCAGCGTTTACACACCAAGAAGTGCATCGTTTGGTTTTTGAAA
TCATGAACGATGCCCAGCGCAGTGAGTTCGAAGAAAAACTCGAAGTCGATTTCTCTTTTGAATTGCATAACGTTGGCCGT
TTTCGTGTCAACGCTTTCAACCAATCTCGCGGTTGTGCGGCAGTGTTCCGTACCATCCCAAGTAGCATCCCAACTCTGGA
AGAGCTAGAAGCGCCAGAGATCTTCAAAAAAATCGCGAATGCTGAAAAAGGTTTGGTTTTGGTTACTGGCCCAACGGGTT
CTGGTAAATCGACAACCTTAGCAGCCATTGTTGACTACATTAACCGTAATCACAACAAGCATATCCTCACAATTGAAGAT
CCGATTGAATTTGTTCACAACAACAATAAGTGTTTGATCAACCAACGTGAGGTTCACCGTGATACCCATAGCTTCCAAAA
CGCGCTACGCAGCGCATTGCGTGAAGACCCGGATGTGATCCTTGTCGGTGAGATGCGTGATAAAGAAACCATCAGCCTAG
CGTTAACGGCGGCGGAAACGGGTCACCTAGTTTTCGGTACGTTGCACACCAGTTCAGCAGCAAAAACCATCGACCGTATC
ATCGATGTGTTCCCAGGTAGTGACAAAGACATGGTGCGTTCCATGTTGTCTGAATCCCTTCGTTCAGTTATCGCGCAAAA
ACTGTTGAAACGTAATGGCGGTGGTCGTATCGCTTGTCACGAAATCATGATGGCAACGCCCGCGATTCGTAACTTGATTC
GCGAAGACAAAGTCGCGCAGATGTACTCAATCATTCAAACGGGTGCCGCGCATGGAATGCAAACCATGGAACAAAATGCC
CGTCAGTTGATGGCGCAAGGCATGGTTTCGCGCGAAGAGGTCGACAGCAAGATTGGGCTTGAAGTGCAGCAATTCTCGTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

87.246

99.711

0.87
  pilT Vibrio cholerae strain A1552

87.246

99.711

0.87
  pilT Acinetobacter baumannii D1279779

72.727

95.376

0.694
  pilT Acinetobacter baumannii strain A118

72.727

95.376

0.694
  pilT Acinetobacter nosocomialis M2

72.424

95.376

0.691
  pilT Acinetobacter baylyi ADP1

71.515

95.376

0.682
  pilT Pseudomonas aeruginosa PAK

69.733

97.399

0.679
  pilT Pseudomonas stutzeri DSM 10701

69.436

97.399

0.676
  pilT Legionella pneumophila strain Lp02

68.278

95.665

0.653
  pilT Legionella pneumophila strain ERS1305867

68.278

95.665

0.653
  pilT Neisseria meningitidis 8013

65.766

96.243

0.633
  pilT Neisseria gonorrhoeae MS11

65.465

96.243

0.63
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.145

91.908

0.488
  pilU Vibrio cholerae strain A1552

41.916

96.532

0.405
  pilU Pseudomonas stutzeri DSM 10701

41.018

96.532

0.396
  pilU Acinetobacter baylyi ADP1

39.375

92.486

0.364

Multiple sequence alignment