Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VP_RS12305 Genome accession   NC_004603
Coordinates   2675642..2676160 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus RIMD 2210633     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2670642..2681160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP_RS12280 (VP2532) rimM 2670751..2671299 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  VP_RS12285 (VP2533) rpsP 2671328..2671576 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  VP_RS12290 (VP2534) ffh 2671786..2673168 (-) 1383 WP_005462555.1 signal recognition particle protein -
  VP_RS12295 (VP2535) - 2673381..2674175 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  VP_RS12300 (VP2536) - 2674301..2675581 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  VP_RS12305 (VP2537) luxS 2675642..2676160 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  VP_RS12310 (VP2538) - 2676227..2676832 (-) 606 WP_005480904.1 hypothetical protein -
  VP_RS12315 (VP2539) gshA 2676857..2678425 (-) 1569 WP_005462538.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=22754 VP_RS12305 WP_005462534.1 2675642..2676160(-) (luxS) [Vibrio parahaemolyticus RIMD 2210633]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=22754 VP_RS12305 WP_005462534.1 2675642..2676160(-) (luxS) [Vibrio parahaemolyticus RIMD 2210633]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTGAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTTGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment