Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   MMJJ_RS00295 Genome accession   NZ_CP026606
Coordinates   56840..57211 (+) Length   123 a.a.
NCBI ID   WP_104837161.1    Uniprot ID   -
Organism   Methanococcus maripaludis strain DSM 2067     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 51840..62211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMJJ_RS00270 (MMJJ_00530) cobS 52504..53277 (+) 774 WP_011170882.1 adenosylcobinamide-GDP ribazoletransferase -
  MMJJ_RS00275 (MMJJ_00540) - 53331..54077 (-) 747 WP_104837157.1 coenzyme F420-0:L-glutamate ligase -
  MMJJ_RS00280 (MMJJ_00550) aroE 54094..54930 (-) 837 WP_104837158.1 shikimate dehydrogenase -
  MMJJ_RS00285 (MMJJ_00560) - 54936..55433 (-) 498 WP_104837159.1 UPF0254 family protein -
  MMJJ_RS00290 (MMJJ_00570) - 55709..56755 (+) 1047 WP_104837160.1 CheF family chemotaxis protein -
  MMJJ_RS00295 (MMJJ_00580) vraR 56840..57211 (+) 372 WP_104837161.1 response regulator Regulator
  MMJJ_RS00300 (MMJJ_00590) - 57227..57916 (+) 690 WP_104837162.1 chemotaxis protein CheC -
  MMJJ_RS00305 (MMJJ_00600) - 57937..58545 (+) 609 WP_104837163.1 chemotaxis protein CheC -
  MMJJ_RS00310 (MMJJ_00610) - 58616..59428 (+) 813 WP_104837164.1 CheR family methyltransferase -
  MMJJ_RS00315 (MMJJ_00620) - 59453..60856 (-) 1404 WP_104837165.1 methyl-accepting chemotaxis protein -
  MMJJ_RS00320 (MMJJ_00630) - 60873..61337 (-) 465 WP_104837166.1 chemotaxis protein CheD -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13534.89 Da        Isoelectric Point: 4.6952

>NTDB_id=227513 MMJJ_RS00295 WP_104837161.1 56840..57211(+) (vraR) [Methanococcus maripaludis strain DSM 2067]
MASIVKTMIVDDSAFMRNILKRILSTTNKYVVIGEAANGAEAIKMAEELQPDLISMDIVMPETDGITATKAIKEKTPEIK
IVMCTSVDQEQKMIDAVNAGADGYIVKPFQAPKILEQFNKLFP

Nucleotide


Download         Length: 372 bp        

>NTDB_id=227513 MMJJ_RS00295 WP_104837161.1 56840..57211(+) (vraR) [Methanococcus maripaludis strain DSM 2067]
ATGGCAAGTATTGTAAAAACAATGATTGTAGATGATTCTGCATTTATGAGGAACATTTTAAAGCGAATTTTATCAACAAC
AAATAAATACGTGGTAATTGGTGAAGCAGCTAATGGAGCAGAAGCAATTAAAATGGCTGAAGAGTTACAGCCTGATTTAA
TCAGTATGGATATTGTAATGCCTGAAACTGATGGAATAACTGCTACAAAAGCAATAAAGGAAAAAACCCCTGAAATCAAG
ATAGTAATGTGTACATCCGTAGATCAAGAGCAAAAAATGATTGATGCTGTAAATGCAGGTGCAGATGGATATATTGTAAA
ACCATTTCAGGCACCAAAAATTTTAGAACAGTTTAACAAATTGTTTCCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.379

94.309

0.39