Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C4E05_RS19860 Genome accession   NZ_CP026580
Coordinates   3653888..3654364 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC005237     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3648888..3659364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4E05_RS19830 (C4E05_20980) paoD 3650477..3651433 (+) 957 WP_000121359.1 molybdenum cofactor insertion chaperone PaoD -
  C4E05_RS19835 (C4E05_20985) - 3651484..3651822 (+) 339 Protein_3463 LysR substrate-binding domain-containing protein -
  C4E05_RS19840 (C4E05_20990) - 3652143..3652511 (-) 369 WP_001094398.1 TA system toxin CbtA family protein -
  C4E05_RS19845 (C4E05_20995) - 3652532..3652890 (-) 359 Protein_3465 type IV toxin-antitoxin system YeeU family antitoxin -
  C4E05_RS19850 (C4E05_21000) - 3652941..3653585 (-) 645 WP_000086755.1 hypothetical protein -
  C4E05_RS19855 (C4E05_21005) yeeT 3653604..3653825 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  C4E05_RS19860 (C4E05_21010) radC 3653888..3654364 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  C4E05_RS19865 (C4E05_21015) - 3654380..3654853 (-) 474 WP_000855059.1 antirestriction protein -
  C4E05_RS19875 (C4E05_21025) - 3655195..3656016 (-) 822 WP_001234565.1 DUF932 domain-containing protein -
  C4E05_RS19885 (C4E05_27090) - 3656117..3656325 (-) 209 Protein_3471 DUF905 family protein -
  C4E05_RS19890 (C4E05_21035) - 3656426..3656881 (-) 456 WP_000581506.1 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=227490 C4E05_RS19860 WP_001186774.1 3653888..3654364(-) (radC) [Escherichia coli strain WCHEC005237]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=227490 C4E05_RS19860 WP_001186774.1 3653888..3654364(-) (radC) [Escherichia coli strain WCHEC005237]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment