Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C4E05_RS07960 Genome accession   NZ_CP026580
Coordinates   1173169..1173684 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain WCHEC005237     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168169..1178684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4E05_RS07915 (C4E05_08275) csrA 1168756..1168941 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C4E05_RS07945 (C4E05_08305) yqaB 1170399..1170965 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C4E05_RS07950 (C4E05_08310) yqaA 1170962..1171390 (+) 429 WP_039023139.1 YqaA family protein -
  C4E05_RS07955 (C4E05_08315) gshA 1171463..1173019 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C4E05_RS07960 (C4E05_08320) luxS 1173169..1173684 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C4E05_RS07965 (C4E05_08325) emrB 1173748..1175286 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C4E05_RS07970 (C4E05_08330) emrA 1175303..1176475 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C4E05_RS07975 (C4E05_08335) emrR 1176602..1177132 (-) 531 WP_000378447.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C4E05_RS07980 (C4E05_08340) ygaH 1177223..1177558 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C4E05_RS07985 (C4E05_08345) ygaZ 1177548..1178285 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=227455 C4E05_RS07960 WP_001130211.1 1173169..1173684(+) (luxS) [Escherichia coli strain WCHEC005237]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=227455 C4E05_RS07960 WP_001130211.1 1173169..1173684(+) (luxS) [Escherichia coli strain WCHEC005237]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731