Detailed information NTG0227322

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C3K24_RS08770
• Genome accession: NZ_CP026491
• Coordinates: 1653068..1654060 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain HS13-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1648068..1659060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3K24_RS08750 (C3K24_08740)	ygbM	1648699..1649475 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
C3K24_RS08755 (C3K24_08745)	ygbN	1649564..1650928 (+)	1365	WP_000104443.1	GntP family transporter	-
C3K24_RS08760 (C3K24_08750)	-	1651071..1652114 (-)	1044	WP_061091371.1	MBL fold metallo-hydrolase	-
C3K24_RS08765 (C3K24_08755)	-	1652339..1652890 (+)	552	WP_001179442.1	flavodoxin family protein	-
C3K24_RS08770 (C3K24_08760)	rpoS	1653068..1654060 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C3K24_RS08775 (C3K24_08765)	nlpD	1654123..1655217 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C3K24_RS08780 (C3K24_08770)	pcm	1655402..1656028 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
C3K24_RS08785 (C3K24_08775)	surE	1656022..1656783 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C3K24_RS08790 (C3K24_08780)	truD	1656764..1657813 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
C3K24_RS08795 (C3K24_08785)	ispF	1657810..1658289 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C3K24_RS08800 (C3K24_08790)	ispD	1658289..1658999 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=227322 C3K24_RS08770 WP_000081550.1 1653068..1654060(-) (rpoS) [Escherichia coli strain HS13-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=227322 C3K24_RS08770 WP_000081550.1 1653068..1654060(-) (rpoS) [Escherichia coli strain HS13-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715