Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C3K24_RS04470 Genome accession   NZ_CP026491
Coordinates   812398..813825 (+) Length   475 a.a.
NCBI ID   WP_000980562.1    Uniprot ID   -
Organism   Escherichia coli strain HS13-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 807398..818825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K24_RS04435 (C3K24_04430) yeeW 807582..807776 (+) 195 WP_000988600.1 DUF5983 family protein -
  C3K24_RS29460 - 807822..807902 (+) 81 Protein_815 hypothetical protein -
  C3K24_RS04440 (C3K24_04435) - 808191..808337 (-) 147 Protein_816 transposase domain-containing protein -
  C3K24_RS04445 (C3K24_04440) - 808391..808573 (+) 183 WP_001016349.1 EutP/PduV family microcompartment system protein -
  C3K24_RS04450 (C3K24_04445) tmaR 808674..809003 (-) 330 WP_000450409.1 DUF496 family protein -
  C3K24_RS04455 (C3K24_04450) yeeA 809175..810233 (-) 1059 WP_001200892.1 FUSC family protein -
  C3K24_RS04460 (C3K24_04455) sbmC 810431..810904 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  C3K24_RS04465 (C3K24_04460) dacD 811023..812189 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C3K24_RS04470 (C3K24_04465) sbcB 812398..813825 (+) 1428 WP_000980562.1 exodeoxyribonuclease I Machinery gene
  C3K24_RS04475 (C3K24_04470) tsuB 813868..814095 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C3K24_RS04480 (C3K24_04475) tsuA 814109..815167 (-) 1059 WP_000492334.1 thiosulfate utilization transporter TsuA/YeeE -
  C3K24_RS04485 (C3K24_04480) plaP 815346..816704 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C3K24_RS04490 (C3K24_04485) yoeI 816694..816756 (-) 63 WP_010723108.1 membrane protein YoeI -
  C3K24_RS04495 (C3K24_04490) yeeY 816971..817900 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  C3K24_RS04500 (C3K24_04495) yeeZ 817946..818770 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.82 Da        Isoelectric Point: 5.7523

>NTDB_id=227310 C3K24_RS04470 WP_000980562.1 812398..813825(+) (sbcB) [Escherichia coli strain HS13-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=227310 C3K24_RS04470 WP_000980562.1 812398..813825(+) (sbcB) [Escherichia coli strain HS13-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGAAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581