Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C3K23_RS25570 Genome accession   NZ_CP026490
Coordinates   5612197..5612982 (-) Length   261 a.a.
NCBI ID   WP_003951282.1    Uniprot ID   A0ABR4S5N7
Organism   Streptomyces sp. 604F     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5607197..5617982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K23_RS25560 (C3K23_25960) - 5608165..5610027 (+) 1863 WP_023421507.1 IucA/IucC family siderophore biosynthesis protein -
  C3K23_RS25565 (C3K23_25965) - 5610114..5612102 (+) 1989 WP_164183013.1 ATP-dependent DNA helicase -
  C3K23_RS25570 (C3K23_25970) dinR/lexA 5612197..5612982 (-) 786 WP_003951282.1 transcriptional repressor LexA Regulator
  C3K23_RS25575 (C3K23_25975) nrdR 5613605..5614117 (+) 513 WP_023421506.1 transcriptional regulator NrdR -
  C3K23_RS25580 (C3K23_25980) - 5614255..5617125 (+) 2871 WP_164183015.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28190.95 Da        Isoelectric Point: 8.9090

>NTDB_id=227291 C3K23_RS25570 WP_003951282.1 5612197..5612982(-) (dinR/lexA) [Streptomyces sp. 604F]
MTTTADSATITAQGRSQGRRESVHAMNEPASPQEGAKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPADTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDNHIWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=227291 C3K23_RS25570 WP_003951282.1 5612197..5612982(-) (dinR/lexA) [Streptomyces sp. 604F]
GTGACCACGACCGCAGACAGCGCCACCATCACCGCCCAGGGCCGGTCCCAGGGACGACGGGAGTCGGTGCACGCCATGAA
TGAGCCCGCCTCGCCCCAGGAGGGGGCGAAGCCCGCCCGCTCGCTCCCCGGACGACCTCCGGGCATCCGCGCGGACAGCT
CAGGACTGACCGACCGGCAGCGCCGCGTGATCGAGGTCATCCGCGACTCGGTGCAGCGCCGCGGCTACCCGCCGTCGATG
CGCGAGATCGGACAGGCCGTCGGCCTCTCCAGCACCTCCTCGGTGGCCCACCAGCTGATGGCCCTGGAGCGCAAGGGCTT
CCTCCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCCGACCAGCCGAGCGCGCAGCCCGCGGACACCA
CGGGCAAGCCCGCCGCCTCCTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCCCTCCCCCGCCAGCTGGTCGGTGACGGTGAGCTCTTCGTCCTCAAGGTCGTCGGTGACTCCATGAT
CGAGGCGGCCATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCGCGA
TGCTGGACGGCGAGGCCACCGTGAAGCGGTTCAAGCGCGAGGACAACCACATCTGGCTCCTCCCGCACAACGCGGCCTAC
CAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCGGTCCTGCGAAGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

81.226

0.379