Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C3K23_RS11905 Genome accession   NZ_CP026490
Coordinates   2580376..2581065 (+) Length   229 a.a.
NCBI ID   WP_164180958.1    Uniprot ID   -
Organism   Streptomyces sp. 604F     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2575376..2586065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K23_RS11890 (C3K23_12050) - 2576689..2577738 (-) 1050 WP_023419056.1 XRE family transcriptional regulator -
  C3K23_RS11895 (C3K23_12055) - 2578235..2579101 (-) 867 WP_023419055.1 XRE family transcriptional regulator -
  C3K23_RS11900 (C3K23_12060) - 2579098..2579910 (-) 813 WP_164180956.1 helix-turn-helix domain-containing protein -
  C3K23_RS11905 (C3K23_12065) vraR 2580376..2581065 (+) 690 WP_164180958.1 response regulator transcription factor Regulator
  C3K23_RS11910 (C3K23_12075) - 2581422..2581967 (-) 546 WP_164180960.1 DUF3017 domain-containing protein -
  C3K23_RS11915 (C3K23_12080) - 2581990..2582853 (-) 864 WP_023419051.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  C3K23_RS11920 (C3K23_12085) - 2583159..2583803 (+) 645 WP_164180962.1 hypothetical protein -
  C3K23_RS11925 (C3K23_12090) purH 2583881..2585443 (-) 1563 WP_164180964.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 23868.52 Da        Isoelectric Point: 7.4047

>NTDB_id=227255 C3K23_RS11905 WP_164180958.1 2580376..2581065(+) (vraR) [Streptomyces sp. 604F]
MTGVPGPAPAPLTVLLVDDEPLVRAGLRAVLEAQPDITVVGEAADGAAVVPLVRRLRPDVVAMDVRMPLMDGIGATRAVL
RTVPDPPKIVVVTTFENDAYVYGALRAGADGFLLKRARPAEIVHALRAVAAGGSLLFPSAVRELAAAHAQEPGSAEARQT
LRRAALTDREGQVLRLMARGLSNTEIAAHLTVGTETVKSHVSAVLSQPGARDRTQAVIAAYESGFVSPG

Nucleotide


Download         Length: 690 bp        

>NTDB_id=227255 C3K23_RS11905 WP_164180958.1 2580376..2581065(+) (vraR) [Streptomyces sp. 604F]
ATGACCGGCGTACCCGGGCCGGCTCCCGCGCCCCTCACCGTGCTGCTGGTCGACGACGAGCCCCTGGTCCGCGCCGGTCT
GCGCGCCGTCCTGGAGGCCCAGCCGGACATCACCGTCGTCGGCGAGGCGGCGGACGGCGCCGCGGTCGTCCCCCTGGTCC
GCCGGCTACGCCCCGACGTGGTGGCGATGGACGTCCGCATGCCCCTCATGGACGGCATCGGGGCCACCCGCGCCGTCCTG
CGCACCGTCCCCGACCCGCCGAAGATCGTGGTCGTCACCACCTTCGAGAACGACGCGTACGTCTACGGGGCGCTGCGCGC
GGGCGCCGACGGCTTCCTCCTCAAGCGCGCCCGCCCCGCCGAGATCGTGCACGCCCTGCGCGCGGTGGCCGCCGGAGGCT
CGCTCCTCTTCCCCTCCGCCGTGCGGGAGTTGGCGGCGGCCCACGCCCAGGAGCCCGGCTCCGCCGAGGCCCGGCAGACC
CTGCGCCGGGCCGCCCTCACCGACCGCGAGGGTCAGGTACTCCGCCTGATGGCCCGCGGCCTGTCCAACACGGAGATCGC
CGCCCACCTGACCGTCGGCACCGAGACCGTCAAGTCCCACGTCAGCGCCGTCCTGTCCCAACCCGGCGCCCGCGACCGCA
CCCAGGCGGTCATCGCCGCGTACGAGTCGGGCTTCGTCTCCCCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-126)

Bacterial regulatory proteins, luxR family (GerE)

(165-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.249

94.76

0.362

Multiple sequence alignment