Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   B6254_RS08020 Genome accession   NZ_CP020928
Coordinates   1681146..1682960 (-) Length   604 a.a.
NCBI ID   WP_108730720.1    Uniprot ID   -
Organism   Weissella cibaria strain M2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676146..1687960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6254_RS07990 (B6254_1637) - 1676156..1676551 (+) 396 WP_043941206.1 hypothetical protein -
  B6254_RS07995 (B6254_1638) - 1676640..1677740 (-) 1101 WP_043711534.1 Xaa-Pro peptidase family protein -
  B6254_RS08000 (B6254_1639) ccpA 1677992..1678993 (+) 1002 WP_043709999.1 catabolite control protein A -
  B6254_RS08005 (B6254_1640) - 1679052..1679624 (-) 573 WP_010372524.1 hypothetical protein -
  B6254_RS08010 (B6254_1641) - 1679640..1680029 (-) 390 WP_010372520.1 DUF948 domain-containing protein -
  B6254_RS08015 (B6254_1642) - 1680337..1681053 (+) 717 WP_108730719.1 MIP/aquaporin family protein -
  B6254_RS08020 (B6254_1643) pepF 1681146..1682960 (-) 1815 WP_108730720.1 oligoendopeptidase F Regulator
  B6254_RS08025 (B6254_1644) - 1683000..1684034 (-) 1035 WP_108730721.1 competence protein CoiA family protein -
  B6254_RS08030 (B6254_1645) - 1684136..1685500 (-) 1365 WP_108730722.1 PTS sugar transporter subunit IIC -
  B6254_RS08035 (B6254_1646) - 1685567..1687018 (-) 1452 WP_108730723.1 6-phospho-beta-glucosidase -
  B6254_RS08040 (B6254_1647) - 1687024..1687347 (-) 324 WP_010372502.1 PTS lactose/cellobiose transporter subunit IIA -
  B6254_RS08045 (B6254_1648) - 1687393..1687710 (-) 318 WP_060654617.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67749.61 Da        Isoelectric Point: 4.2912

>NTDB_id=227224 B6254_RS08020 WP_108730720.1 1681146..1682960(-) (pepF) [Weissella cibaria strain M2]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFAQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPVVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANENGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEERLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=227224 B6254_RS08020 WP_108730720.1 1681146..1682960(-) (pepF) [Weissella cibaria strain M2]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCCGAGTCAATGACTTGGAATTTGCAGACGATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGACTTCTTCGCCCAATCAGCAACGACGTCAG
GTACAGATTTGTACAATGCGTTGCAATACGGCTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCGGCACGTGTTTCTGC
GGCCATTGCATTCTTTGATCCAGTTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAACCTAAGC
TGGGTGCGTACAAGCATTACTTCGAGAGCATCCTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCCGGGGATGTTTTTGGGGCTTCAGAACGGACGTTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAAATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTGTTGGAGTCAACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATCGCAAGTCACGTG
AAGGGTCATAACTTTATGGCTGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTTGCGGAAGTAAATGAGGCGTTGCCATTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGTGAACCTGACTTTACGATTGATTACGAA
TCTGCTCAGGCTGAAGCATTAAAGGCGTTGGCACCATTGGGCGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCTTACTCGGGTGGTTCATACGATACAAATCCATTCA
TTTTGCTGAACTGGGTCGATAACTTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCGTATTTG
ACTCGTCAAAATCAACCATACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCGTATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACAGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGATGCACGTTACGGATGCGCAAGGCGTGCCATTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAGCTTAACCGACGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTATTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGACAAGATTTTGACTGAAGGGGCACCGGCTGTGGCAGCTTACAAGGAATACTTGAAGGCTGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCTGGGCTTGATATGACTAAGCCGGATTACTTGCGTGACACATTCAAAGTGTT
CGAAGAACGCTTGAACGAATTTGAAGCGTTGGTCGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-584)

Oligopeptidase F (Peptidase_M3_N)

(117-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

97.848

0.523

Multiple sequence alignment