Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   YKEC1_RS05955 Genome accession   NZ_CP026473
Coordinates   1138872..1139387 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain KBN10P04869     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1133872..1144387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YKEC1_RS05910 (YKEC1_1092) csrA 1134459..1134644 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  YKEC1_RS05940 (YKEC1_1093) yqaB 1136102..1136668 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  YKEC1_RS05945 (YKEC1_1094) yqaA 1136665..1137093 (+) 429 WP_001287457.1 YqaA family protein -
  YKEC1_RS05950 (YKEC1_1095) gshA 1137166..1138722 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  YKEC1_RS05955 (YKEC1_1096) luxS 1138872..1139387 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  YKEC1_RS05960 (YKEC1_1097) emrB 1139451..1140989 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  YKEC1_RS05965 (YKEC1_1098) emrA 1141006..1142178 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  YKEC1_RS05970 (YKEC1_1099) emrR 1142305..1142835 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  YKEC1_RS05975 (YKEC1_1100) ygaH 1142926..1143261 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  YKEC1_RS05980 (YKEC1_1101) ygaZ 1143251..1143988 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=227176 YKEC1_RS05955 WP_001130207.1 1138872..1139387(+) (luxS) [Escherichia coli strain KBN10P04869]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=227176 YKEC1_RS05955 WP_001130207.1 1138872..1139387(+) (luxS) [Escherichia coli strain KBN10P04869]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731